1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
GACCTGAGTAGCGAACCACGGTACCTTGTTACTTTTACAGTTGGAATTACACAGAAGGCTAATATTGATGCTGCTGTCAAAAAGgtaactgagacggacatcttgcattgcttaaatttggtgcatcaatcaactataccctgtaacagataaacagttaatcttgcattccggtgaactggtagtcactttttcttaatgtaaatatgcaattattgcttctgaattcatagaagcttttcatatag
species | Oryza sativa |
transcript | LOC_Os02g19510.3 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TTACAGTTGGAATTACACAGAAGGCTAATATTGATGCTGCTGTCAAAAAG TTTTCAGATAAATTCACTATCATGCTATTCCATTATGATGGCCGGACTACTEST: gi|88360895|gb|CI625201.1|CI625201
genomic: TTACAGTTGGAATTACACAGAAGGCTAATATTGATGCTGCTGTCAAAAAGgtaactgaga ... tttcatatagTTTTCAGATAAATTCACTATCATGCTATTCCATTATGATGGCCGGACTACT
EST: TTACAGTTGGAATTACTCAGAAGGCTAATATTGATGCTGCTGTCAAAAAG TTTTCAGATAAATTCACTATCATGCTATTCCATTATGATGGCCGGACTACTEST: gi|428279|gb|D24427.1|D24427
genomic: TTACAGTTGGAATTACACAGAAGGCTAATATTGATGCTGCTGTCAAAAAGgtaactgaga ... tttcatatagTTTTCAGATAAATTCACTATCATGCTATTCCATTATGATGGCCGGACTACT
EST: TTACAGTTGGAATTACACAGAAGGCTAATATTGATGCTGCTGTCAAAAAG TTTTCAGATAAATTCACTATCATGCTATTCCATTATGATGGCCGGACTACTEST: gi|428340|gb|D24488.1|D24488
genomic: TTACAGTTGGAATTACACAGAAGGCTAATATTGATGCTGCTGTCAAAAAGgtaactgaga ... tttcatatagTTTTCAGATAAATTCACTATCATGCTATTCCATTATGATGGCCGGACTACT
EST: TTACAGTTGGAATTACACAGAAGGCTAATATTGATGCTGCTGTCAAAAAG TTTTCAGATAAATTCACTATCAEST: gi|33675555|gb|CF303794.1|CF303794
genomic: TTACAGTTGGAATTACACAGAAGGCTAATATTGATGCTGCTGTCAAAAAGgtaactgaga ... tttcatatagTTTTCAGATAAATTCACTATCA
EST: TTACAGTTGGAATTACACAGAAGGCTAATATTGATGCTGCTGTCAAAAAG TTTTCAGATAAATTCACTATCATGCTATTCCATTATGATGGCCGGACTACTEST: gi|86906524|gb|CI294647.1|CI294647
genomic: TTACAGTTGGAATTACACAGAAGGCTAATATTGATGCTGCTGTCAAAAAGgtaactgaga ... tttcatatagTTTTCAGATAAATTCACTATCATGCTATTCCATTATGATGGCCGGACTACT
EST: TGGAATTACACAGAAGGCTAATATTGATGCTGCTGTCAAAAAG TTTTCAGATAAATTCACTATCATGCTATTCCATTATGATGGCCGGACTACT
genomic: TGGAATTACACAGAAGGCTAATATTGATGCTGCTGTCAAAAAGgtaactgaga ... tttcatatagTTTTCAGATAAATTCACTATCATGCTATTCCATTATGATGGCCGGACTACT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GACCTGAGTAGCGAACCACGGTACCTTGTTACTTTTACAGTTGGAATTACACAGAAGGCTAATATTGATGCTGCTGTCAAAAAGgtaactgagacggacatcttgcattgcttaaatttggtgcatcaatcaactataccctgtaacagataaacagttaatcttgcattccggtgaactggtagtcactttttcttaatgtaaatatgcaattattgcttctgaattcatagaagcttttcatatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT