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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAATCTTAAGACAAGCACGTATACATGGGAGAATCTATTTGCTGTTTTCGTCTCGACATCAGGTCTAGTTTTGTTTGCACTCCTTATTGGTAATGTGCAGgtatggaatatatcaactgtcatatttttattatgatcataattggattaagtagttaatattttttatatatgcaacttgtgtggagtatcttttttaa...

Basic information

species Oryza sativa
transcript LOC_Os02g15580.3
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g15580.3 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G148118_T02 (Zea mays), 5'ss of exon 5
AAATCTTAAGACAAGCACGTATACATGGGAGAATCTATTTGCTGTTTTCGTCTCGACATCAGGTCTAGTTTTGTTTGCACTCCTTATTGGTAATGTGCAGgtatggaatatat-------caactgtcatatttttattatgatcataattggattaagtagttaatattttttatatatgcaacttgtgtggagtatcttttttaa
 ||  | || ||||||||  |||||| ||||||||| ||||||||||| ||||||||||| ||| | ||| | |||||||| |||||||||||||||||||||  ||   |||       |   ||  || || || | |||    |  ||  ||||||| || | || ||  |||  ||    |     |   | |          
GAACATGAAAACAAGCACTAATACATTGGAGAATCTGTTTGCTGTTTTTGTCTCGACATCGGGTTTGGTTCTATTTGCACTACTTATTGGTAATGTGCAGgtacagacactattttggcactgttgatattttcttgtaatgtatgttgttcaattaagtggtaactaattagtattaataaggccaacatatggaaatg-------