Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTTACTCCTGGACAGGTGGTGGATGCTCAAGATACCACAATGGAGGAGCAGGGTCCAAAAGTAGTTGCTCCAACACCTGAGCAAATCACAGCTATCAAGgtactattgcaagctgtgcaaataactatattatttagctactgcattaaaaaaatgattgtggctatggcttctactggcttgttagtatgctcttgat...

Basic information

species Oryza sativa
transcript LOC_Os02g13990.3
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g13990.3 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G021742_T02 (Zea mays), 5'ss of exon 5
---TTTTACTCCTGGACAGGTGGTGGATGCTCAAGATACCACAATGGAGGAGCAGGGTCCAAAAGTAGTTGCTCCAACACCTGAGCAAATCACAGCTATCAAGgtactattgcaagct-gtgcaa-ataactatattatttagctactgcattaaaaaaatgattgtggctatggcttctactggcttgttagtatgctcttgat-
    ||||||||||| |   ||   |||||||| || | ||||||||||   || ||||| ||||||||||||||||| ||||| ||||||||||||||||||||||   ||||   |   | || || |  |    | |  | |  ||     | ||  | || | |  |   | ||     |  |   |   |  |    ||| 
AACGTTTACTCCTGGTC---TGCCTGATGCTCAGGACATCACAATGGAGCCACAAGGTCCTAAAGTAGTTGCTCCAACTCCTGAACAAATCACAGCTATCAAGgtac--atgcattttcacgtaatattatgaagacagtgtgttcatgtccccacaagttcatcgagaatcctg-ttaggtggtatgagtgacactcctcagata
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29681479|gb|CB677754.1|CB677754
EST:     AGGGTCCAAAAGTAGTTGCTCCAACACCTGAGCAAATCACAGCTATCAAG                         GCTGCCATTGTGAATTCTCAGACACTTGAGGAGGTTGCAAGGCTTGAAAAG
genomic: AGGGTCCAAAAGTAGTTGCTCCAACACCTGAGCAAATCACAGCTATCAAGgtactattgc ... ccatctgcagGCTGCCATTGTGAATTCTCAGACACTTGAGGAGGTTGCAAGGCTTGAAAAG
EST: gi|88201604|gb|CI201959.1|CI201959
EST:     TCCAACACCTGAGCAAATCACAGCTATCAAG                         GCTGCCATTGTGAATTCTCAGACACTTGAGGAGGTTGCAAGGCTTGAAAAG
genomic: TCCAACACCTGAGCAAATCACAGCTATCAAGgtactattgc ... ccatctgcagGCTGCCATTGTGAATTCTCAGACACTTGAGGAGGTTGCAAGGCTTGAAAAG
EST: gi|86545114|gb|CI185320.1|CI185320
EST:     AGGGTCCAAAAGTAGTTGCTCCAACACCTGAGCAAATCACAGCTATCAAG                         GCTGCCATTGTGAATTCTCAGACACTTGAGGAGGTTGCAAGGCTTGAAAAG
genomic: AGGGTCCAAAAGTAGTTGCTCCAACACCTGAGCAAATCACAGCTATCAAGgtactattgc ... ccatctgcagGCTGCCATTGTGAATTCTCAGACACTTGAGGAGGTTGCAAGGCTTGAAAAG
EST: gi|88227188|gb|CI228301.1|CI228301
EST:     TCCAACACCTGAGCAAATCACAGCTATCAAG                         GCTGCCATTGTGAATTCTCAGACACTTGAGGAGGTTGCAAGGCTTGAAAAG
genomic: TCCAACACCTGAGCAAATCACAGCTATCAAGgtactattgc ... ccatctgcagGCTGCCATTGTGAATTCTCAGACACTTGAGGAGGTTGCAAGGCTTGAAAAG
EST: gi|86500747|gb|CI143380.1|CI143380
EST:     AGGGTCCAAAAGTAGTTGCTCCAACACCTGAGCAAATCACAGCTATCAAG                         GCTGCCATTGTGAATTCTCAGACACTTGAGGAGGTTGCAAGGCTTGAAAAG
genomic: AGGGTCCAAAAGTAGTTGCTCCAACACCTGAGCAAATCACAGCTATCAAGgtactattgc ... ccatctgcagGCTGCCATTGTGAATTCTCAGACACTTGAGGAGGTTGCAAGGCTTGAAAAG
EST: gi|86421117|gb|CI057106.1|CI057106
EST:     ACCTGAGCAAATCACAGCTATCAAG                         GCTGCCATTGTGAATTCTCAGACACTTGAGGAGGTTGCAAGGCTTGAAAAG
genomic: ACCTGAGCAAATCACAGCTATCAAGgtactattgc ... ccatctgcagGCTGCCATTGTGAATTCTCAGACACTTGAGGAGGTTGCAAGGCTTGAAAAG
EST: gi|86536011|gb|CI176217.1|CI176217
EST:     AGGGTCCAAAAGTAGTTGCTCCAACACCTGAGCAAATCACAGCTATCAAG                         GCTGCCATTGTGAATTCTCAGACACTTGAGGAGGTTGCAAGGCTTGAAAAG
genomic: AGGGTCCAAAAGTAGTTGCTCCAACACCTGAGCAAATCACAGCTATCAAGgtactattgc ... ccatctgcagGCTGCCATTGTGAATTCTCAGACACTTGAGGAGGTTGCAAGGCTTGAAAAG
EST: gi|29645677|gb|CB650684.1|CB650684
EST:     AGGGTCCAAAAGTAGTTGCTCCAACACCTGAGCAAATCACAGCTATCAAG                         GCTGCCATTGTGAATTCTCAGACACTTGAGGAGGTTGCAAGGCTTGAAAAG
genomic: AGGGTCCAAAAGTAGTTGCTCCAACACCTGAGCAAATCACAGCTATCAAGgtactattgc ... ccatctgcagGCTGCCATTGTGAATTCTCAGACACTTGAGGAGGTTGCAAGGCTTGAAAAG
EST: gi|86503360|gb|CI145993.1|CI145993
EST:     AGGGTCCAAAAGTAGTTGCTCCAACACCTGAGCAAATCATAGCTATCAAG                         GCTGCCATTGTGAATTCTCAGACACTTGAGGAGGTTGCCAAGGCTTGAAAA
genomic: AGGGTCCAAAAGTAGTTGCTCCAACACCTGAGCAAATCACAGCTATCAAGgtactattgc ... ccatctgcagGCTGCCATTGTGAATTCTCAGACACTTGAGGAGGTTG-CAAGGCTTGAAAA
EST: gi|5005007|gb|AU068324.1|AU068324
EST:     AGGGTCCAAAAGTAGTTGCTCCAACACCTGAGCAAATCACAGCTATCAAG                         GCTGCCATTGTGAATTCTCAGACACTTGAGGAGGTTGCAAGGCTTGAAAAG
genomic: AGGGTCCAAAAGTAGTTGCTCCAACACCTGAGCAAATCACAGCTATCAAGgtactattgc ... ccatctgcagGCTGCCATTGTGAATTCTCAGACACTTGAGGAGGTTGCAAGGCTTGAAAAG
EST: gi|88223197|gb|CI223046.1|CI223046
EST:     CAACACCTGAGCAAATCACAGCTATCAAG                         GCTGCCATTGTGAATTCTCAGACACTTGAGGAGGTTGCAAGGCTTGAAAAG
genomic: CAACACCTGAGCAAATCACAGCTATCAAGgtactattgc ... ccatctgcagGCTGCCATTGTGAATTCTCAGACACTTGAGGAGGTTGCAAGGCTTGAAAAG
EST: gi|88830705|gb|CI078149.1|CI078149
EST:     AGGGTCCAAAAGTAGTTGCTCCAACACCTGAGCAAATCACAGCTATCAAG                         GCTGCCATTGTGAATTCTCAGACACTTGAGGAGGTTGCAAGGCTTGAAAAG
genomic: AGGGTCCAAAAGTAGTTGCTCCAACACCTGAGCAAATCACAGCTATCAAGgtactattgc ... ccatctgcagGCTGCCATTGTGAATTCTCAGACACTTGAGGAGGTTGCAAGGCTTGAAAAG
EST: gi|88252358|gb|CI350786.1|CI350786
EST:     ACAGCTATCAAG                         GCTGCCATTGTGAATTCTCAGACACTTGAGGAGGTTGCAAGGCTTGAAAAG
genomic: ACAGCTATCAAGgtactattgc ... ccatctgcagGCTGCCATTGTGAATTCTCAGACACTTGAGGAGGTTGCAAGGCTTGAAAAG
EST: gi|86505850|gb|CI148483.1|CI148483
EST:     CTGAGCAAATCACAGCTATCAAG                         GCTGCCATTGTGAATTCTCAGACACTTGAGGAGGTTGCAAGGCTTGAAAAG
genomic: CTGAGCAAATCACAGCTATCAAGgtactattgc ... ccatctgcagGCTGCCATTGTGAATTCTCAGACACTTGAGGAGGTTGCAAGGCTTGAAAAG
EST: gi|116875219|gb|EC365727.1|EC365727
EST:     AGGGTCCAAAAGTAGTTGCTCCAACACCTGAGCAAATCACAGCTATCAAG                         GCTGCCATTGTGAATCCTCAGACACTTGAGGAGGTTGCAAGGCTTGAAAAG
genomic: AGGGTCCAAAAGTAGTTGCTCCAACACCTGAGCAAATCACAGCTATCAAGgtactattgc ... ccatctgcagGCTGCCATTGTGAATTCTCAGACACTTGAGGAGGTTGCAAGGCTTGAAAAG
EST: gi|86496623|gb|CI139256.1|CI139256
EST:     AGGGTCCAAAAGTAGTTGCTCCAACACCTGAGCAAATCACAGCTATCAAG                         GCTGCCATTGTGAATTCTCAGACACTTGAGGAGGTTGCAAGGCTTGAAAAG
genomic: AGGGTCCAAAAGTAGTTGCTCCAACACCTGAGCAAATCACAGCTATCAAGgtactattgc ... ccatctgcagGCTGCCATTGTGAATTCTCAGACACTTGAGGAGGTTGCAAGGCTTGAAAAG
EST: gi|86500143|gb|CI142776.1|CI142776
EST:     AGGGTCCAAAAGTAGTTGCTCCAACACCTGAGCAAATCACAGCTATCAAG                         GCTGCCATTGTGAATTCTCAGACACTTGAGGAGGTTGCAAGGCTTGAAAAG
genomic: AGGGTCCAAAAGTAGTTGCTCCAACACCTGAGCAAATCACAGCTATCAAGgtactattgc ... ccatctgcagGCTGCCATTGTGAATTCTCAGACACTTGAGGAGGTTGCAAGGCTTGAAAAG