1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
TCCCAAGTACTTCAAAGGGATTAAGAAAGTGGTAAATGCAGTGTCAGTTATAGTTGGGCCAAAGGAAGGCGATACACCAGACAGGCAGAAGTATAAACAGgtacgccaaatgccctatcatatgttaccaatatttcacgtactctactttacaccctacaaacttacatttaatctcatcttcatgcag
species | Oryza sativa |
transcript | LOC_Os02g13970.2 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TAGTTGGGCCAAAGGAAGGCGATACACCAGACAGGCAGAAGTATAAACAG GGCATCAAGTTTTTTGAACCTGAGEST: gi|58607818|gb|CK035851.1|CK035851
genomic: TAGTTGGGCCAAAGGAAGGCGATACACCAGACAGGCAGAAGTATAAACAGgtacgccaaa ... cttcatgcagGGCATCAAGTTTTTTGAACCTGAG
EST: AGGCGATACACCAGACAGGCAGAAGTATAAACAG GGCATCAAGTTTTTTGAACCTGAGEST: gi|88389138|gb|CI597936.1|CI597936
genomic: AGGCGATACACCAGACAGGCAGAAGTATAAACAGgtacgccaaa ... cttcatgcagGGCATCAAGTTTTTTGAACCTGAG
EST: TAGTTGGGCCAAAGGAAGGCGATACACCAGACAGGCAGAAGTATAAACAG GGCATCAAGTTEST: gi|29623795|gb|CB628806.1|CB628806
genomic: TAGTTGGGCCAAAGGAAGGCGATACACCAGACAGGCAGAAGTATAAACAGgtacgccaaa ... cttcatgcagGGCATCAAGTT
EST: TAGTTGGGCCAAAGGAAGGCGATACACCAGACAGGCAGAAGTATAAACAG GGCATCAAGTTTTTTGAACCTGAG
genomic: TAGTTGGGCCAAAGGAAGGCGATACACCAGACAGGCAGAAGTATAAACAGgtacgccaaa ... cttcatgcagGGCATCAAGTTTTTTGAACCTGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCCCAAGTACTTCAAAGGGATTAAGAAAGTGGTAAATGCAGTGTCAGTTATAGTTGGGCCAAAGGAAGGCGATACACCAGACAGGCAGAAGTATAAACAGgtacgccaaatgccctatcatatgttaccaatatttcacgtactctactttacaccctacaaacttacatttaatctcatcttcatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT