1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
TCTTCCAAATGGTGGATGCTCAGAGAAGTTATACAACTTCCCAAACAACGACCTATTATTTCCTCCTGGAGGATGCACATCATTGCGTCTGCCTGTGGTAgttgtacttaacccactttattcattatctcatctgtaatcgtgttgttctgtacagcaccaaatctggtgttcacatgtaaaataagtctccttttggcatgaatacttatagatagattttcttcttatggcaaactgcacatatgattacaatatatgagtatttattttcatttactatgtatgcag
species | Oryza sativa |
transcript | LOC_Os02g13110.2 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: ACCTATTATTTCCTCCTGGAGGATGCACATCATTGCGTCTGCCTGTGGTA GTCACTGGCCAAGATTTGAACCTTGTACCAAGATGCCGGCGTGTATATTCAEST: gi|58688678|gb|CK077365.1|CK077365
genomic: ACCTATTATTTCCTCCTGGAGGATGCACATCATTGCGTCTGCCTGTGGTAgttgtactta ... atgtatgcagGTCACTGGCCAAGATTTGAACCTTGTACCAAGATGCCGGCGTGTATATTCA
EST: ACCTATTATTTCCTCCTGGAGGATGCACATCATTGCGTCTGCCTGTGGTA GTCACTGGCCAAGATTTGAACCTTGTACCAAGATGCCGGCGTGTATATTCAEST: gi|33675340|gb|CF303579.1|CF303579
genomic: ACCTATTATTTCCTCCTGGAGGATGCACATCATTGCGTCTGCCTGTGGTAgttgtactta ... atgtatgcagGTCACTGGCCAAGATTTGAACCTTGTACCAAGATGCCGGCGTGTATATTCA
EST: ACCTATTATTTCCTCCTGGAGGATGCACATCATTGCGTCTGCCTGTGGTA GTCACTGGCCAAGATTTGAACCTTGTACCAAGATGCCGGCGTGTATATTCAEST: gi|58681896|gb|CK070583.1|CK070583
genomic: ACCTATTATTTCCTCCTGGAGGATGCACATCATTGCGTCTGCCTGTGGTAgttgtactta ... atgtatgcagGTCACTGGCCAAGATTTGAACCTTGTACCAAGATGCCGGCGTGTATATTCA
EST: ACCTATTATTTCCTCCTGGAGGATGCACATCATTGCGTCTGCCTGTGGTA GTCACTGGCCAAGATTTGAACCTTGTACCAAGATGCCGGCGTGTATATTCAEST: gi|58680356|gb|CK069043.1|CK069043
genomic: ACCTATTATTTCCTCCTGGAGGATGCACATCATTGCGTCTGCCTGTGGTAgttgtactta ... atgtatgcagGTCACTGGCCAAGATTTGAACCTTGTACCAAGATGCCGGCGTGTATATTCA
EST: ACCTATTATTTCCTCCTGGAGGATGCACATCATTGCGTCTGCCTGTGGTA GTCACTGGGCAAGATTTGAACCTTGTACCAAGATGCCGGCGTGTATATTCA
genomic: ACCTATTATTTCCTCCTGGAGGATGCACATCATTGCGTCTGCCTGTGGTAgttgtactta ... atgtatgcagGTCACTGGCCAAGATTTGAACCTTGTACCAAGATGCCGGCGTGTATATTCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTTCCAAATGGTGGATGCTCAGAGAAGTTATACAACTTCCCAAACAACGACCTATTATTTCCTCCTGGAGGATGCACATCATTGCGTCTGCCTGTGGTAgttgtacttaacccactttattcattatctcatctgtaatcgtgttgttctgtacagcaccaaatctggtgttcacatgtaaaataagtctccttttggcatgaatacttatagatagattttcttcttatggcaaactgcacatatgattacaatatatgagtatttattttcatttactatgtatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG