1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GAAGTTGCAGTGAAGAAATTTCTTGACCAGGATTTATCGGGTGTTGCACTAGATCAATTCAAATGTGAAgtgagtccacttttaagatttaatgcattgcatctcttttggagtttgtgtataaatattatcgactttatttcctcaactgagtgtgcattccttctcttcaag
species | Oryza sativa |
transcript | LOC_Os02g12810.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TCTTGACCAGGATTNTATCGGGTGTTGCACTAGATCAATTCAAATGTGAA GTTGGGATCATGTCAAGGCTGAGGCATCCAAATGTAGTTCTGTTCTTGGGAEST: gi|29623119|gb|CB628130.1|CB628130
genomic: TCTTGACCAGGATT-TATCGGGTGTTGCACTAGATCAATTCAAATGTGAAgtgagtccac ... tctcttcaagGTTGGGATCATGTCAAGGCTGAGGCATCCAAATGTAGTTCTGTTCTTGGGA
EST: TTCTTGACCAGGATTTATCGGGTGTTGCACTAGATCAATTCAAATGTGAA AEST: gi|29623119|gb|CB628130.1|CB628130
genomic: TTCTTGACCAGGATTTATCGGGTGTTGCACTAGATCAATTCAAATGTGAAgtgagtccac ... tctcttcaag-
EST: TTCTTGACCAGGATTTATCGGGTGTTGCACTAGATCAATTCAAATGTGAA AEST: gi|58594152|gb|CF992460.1|CF992460
genomic: TTCTTGACCAGGATTTATCGGGTGTTGCACTAGATCAATTCAAATGTGAAgtgagtccac ... tctcttcaag-
EST: TTCTTGACCAGGATTTATCGGGTGTTGCACTAGATCAATCCAAATGTGAA GTTGGGATCATGTCAAGGCTGAGGCATCCAAATGTAGTTCTGTTCTTGGGAEST: gi|33793152|gb|CF322457.1|CF322457
genomic: TTCTTGACCAGGATTTATCGGGTGTTGCACTAGATCAATTCAAATGTGAAgtgagtccac ... tctcttcaagGTTGGGATCATGTCAAGGCTGAGGCATCCAAATGTAGTTCTGTTCTTGGGA
EST: TTCTTGACCAGGATTTATCGGGTGTTGCACTAGATCAATTCAAATGTGAA GTTGGGATCATGTCAAGGCTGAGGCATCCAAATGTAGTTCTGTTCTTGGGAEST: gi|29639858|gb|CB644867.1|CB644867
genomic: TTCTTGACCAGGATTTATCGGGTGTTGCACTAGATCAATTCAAATGTGAAgtgagtccac ... tctcttcaagGTTGGGATCATGTCAAGGCTGAGGCATCCAAATGTAGTTCTGTTCTTGGGA
EST: TTCTTGACCAGGATTTATCGGGTGTTGCACTAGATCAATTCAAATGTGAA GTTGGGATCATGTCAAGGCTGAGGCATCCAAATGTAGTTCTGTTCTTGGGAEST: gi|112785946|gb|EE591740.1|EE591740
genomic: TTCTTGACCAGGATTTATCGGGTGTTGCACTAGATCAATTCAAATGTGAAgtgagtccac ... tctcttcaagGTTGGGATCATGTCAAGGCTGAGGCATCCAAATGTAGTTCTGTTCTTGGGA
EST: TTCTTGACCAGGATTTATCGGGTGTTGCACTAGATCAATTCAAATGTGAA GTTGGGATCATGTCAAGGCTGAGGCATCCAAATGTAGTTCTGTTCTTGGGA
genomic: TTCTTGACCAGGATTTATCGGGTGTTGCACTAGATCAATTCAAATGTGAAgtgagtccac ... tctcttcaagGTTGGGATCATGTCAAGGCTGAGGCATCCAAATGTAGTTCTGTTCTTGGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAGTTGCAGTGAAGAAATTTCTTGACCAGGATTTATCGGGTGTTGCACTAGATCAATTCAAATGTGAAgtgagtccacttttaagatttaatgcattgcatctcttttggagtttgtgtataaatattatcgactttatttcctcaactgagtgtgcattccttctcttcaag
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