ERISdb: a Database of Plant Splice Sites

General
Orthologs
EST
RNA-Seq

Sequence

atgc intronic sequence ATGC exonic sequence

ACACTGACTGCACCTTCATCAGGGTGTCTGGTTCCGAGTTAGTTCAGAAGTACATTGGTGAGGGTTCTCGGATGGTCCGTGAACTCTTTGTTATGGCCAGgtaaactgagcaaaaataccctgagttcttctattatagtgaaagcattattggcttgcaatctgaactatagttctacatatgcactctgttgtcagtgtaggcttaattgtttggttaacatattacag

Basic information

species	Oryza sativa
transcript	LOC_Os02g11050.1
intron #	5
splice site	5'
intron type	U2

Orthologous splice sites

atgc intronic sequence ATGC exonic sequence

upper sequence: LOC_Os02g11050.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G137528_T01 (Zea mays), 5'ss of exon 5

ACACTGACTGCACCTTCATCAGGGTGTCTGGTTCCGAGTTAGTTCAGAAGTACATTGGTGAGGGTTCTCGGATGGTCCGTGAACTCTTTGTTATGGCCAGgtaaactgagcaaaaataccctgagttcttctattatagtg---aaagcattattggcttgcaatctgaactatagttctacatatgcactctgttgtcagtgtaggcttaattgtttggttaacatattacag
|||||||||||||||||||||||||||||||||| || || ||||||||||| |||||||| ||||| |||||||| || |||||||||||||||||||||||  ||||||||| ||  ||  | ||||| |  | | ||     |||||||| ||| |     |  |  |     || | | | ||       |||     | |                             
ACACTGACTGCACCTTCATCAGGGTGTCTGGTTCTGAATTGGTTCAGAAGTATATTGGTGAAGGTTCCCGGATGGTTCGGGAACTCTTTGTTATGGCCAGgtaggctgagcaaatatctccacatttcttttcctgtcgtacctgaagcattagtggttacttgttaggcc-----ttgttcgtttgtgtcggattgcacccgga-----------------------------

upper sequence: LOC_Os02g11050.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G107362_T04 (Zea mays), 5'ss of exon 5

ACACTGACTGCACCTTCATCAGGGTGTCTGGTTCCGAGTTAGTTCAGAAGTACATTGGTGAGGGTTCTCGGATGGTCCGTGAACTCTTTGTTATGGCCAGgtaaactgagcaaaaataccctgagttcttctattatagtgaaag-cattatt--ggcttgcaatctgaacta-tagttctacatatgcactc-tgttgtcagtgtaggcttaattgtttggttaacatattacag
|||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||| || ||||||||  | |||||||||||||||||||||||  ||||| ||| ||  ||  | ||||| |  | | ||  ||  | || ||  |||  |  | ||||   | ||  || |||| |    || ||||||                                    
ACACTGACTGCACCTTCATCAGGGTGTCTGGTTCTGAGTTGGTTCAGAAGTATATTGGTGAGGGCTCCCGGATGGTTAGGGAACTCTTTGTTATGGCCAGgtaggctgagtaaatatctccacatttcttttccttttgtagaactctttgttatggccaggtagctgagtaaatatctccacatttcttttcctgttgt------------------------------------

upper sequence: LOC_Os02g11050.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GLYMA08G24000.1 (Glycine max), 5'ss of exon 5

ACACTGACTGCACCTTCATCAGGGTGTCTGGTTCCGAGTTAGTTCAGAAGTACATTGGTGAGGGTTCTCGGATGGTCCGTGAACTCTTTGTTATGGCCAGgtaaactgagcaaaaataccctgagttcttctattatagtgaaagcattattggcttgcaatctgaactatagttctacatatgcactctgttgtcagtgtaggcttaattgtttggttaacatattacag
| |||||||| || |||||||||||||||||||| || ||||||||||| |||||||| || |||||| | |||||| | ||||| ||||||||||||||||  | |      |   | | |   |   || |||||  ||       | || ||    || |  |||   ||      |||   ||  |||  ||    | ||||| ||                     
ATACTGACTGTACATTCATCAGGGTGTCTGGTTCTGAATTAGTTCAGAAATACATTGGAGAAGGTTCTAGAATGGTCAGGGAACTTTTTGTTATGGCCAGgtttattctcttcactcagcttcc-tctatccattatc-tgttgattctgtttgccctaaaccaaaacagaag----ggataaaaacattgtcttc----ttggcttcat---------------------

upper sequence: LOC_Os02g11050.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GLYMA07G00420.1 (Glycine max), 5'ss of exon 5

ACACTGACTGCACCTTCATCAGGGTGTCTGGTTCCGAGTTAGTTCAGAAGTACATTGGTGAGGGTTCTCGGATGGTCCGTGAACTCTTTGTTATGGCCAGgtaaactgagcaaaaataccctgagttcttctattatagtgaaagcattattggcttgcaatctgaactatagttctacatatgcactctgttgtcagtgtaggcttaattgtttggttaacatattacag
| |||||||| || |||||||||||||||||||| |||||||||||||| |||||||| || |||||| | |||||| | ||||| ||||||||||||||||  | |      |  |  | |    | ||| |||||  ||       | || || |   | |  |||   ||      |||   ||  |||  ||    | ||||| ||                     
ATACTGACTGTACATTCATCAGGGTGTCTGGTTCTGAGTTAGTTCAGAAATACATTGGAGAAGGTTCTAGAATGGTCAGGGAACTTTTTGTTATGGCCAGgtttattctctttacttggcttcctctattc-attatc-tgttgattctgtttgccttacaccaaaacagaag----ggataaaaacaatgtcttc----ttggcttcat---------------------

upper sequence: LOC_Os02g11050.1 (Oryza sativa), 5'ss of exon 5
lower sequence: AT5G19990.1 (Arabidopsis thaliana), 5'ss of exon 5

ACACTGACTGCACCTTCATCAGGGTGTCTGGTTCCGAGTTAGTTCAGAAGTACATTGGTGAGGGTTCTCGGATGGTCCGTGAACTCTTTGTTATGGCCAGgtaaactgagcaaaaataccctgagttcttctattatagtgaaagcattattggcttgcaatctgaactatagttctacatatgcactctgttgtcagtgtaggcttaattgtttggttaacatattacag
|||||||||| || ||||| || || |||||||||||| | || ||||| |||||||| || |||||| | |||||| | ||||| ||||| ||||| |||| |  |       | | ||||    | ||  |||  |   |  | | || ||| |   |     |  |  |  | |  ||| |    |   | | |   |   |                          
ACACTGACTGTACTTTCATAAGAGTTTCTGGTTCCGAGCTTGTCCAGAAATACATTGGAGAAGGTTCTAGAATGGTCAGAGAACTTTTTGTGATGGCAAGgttag-tatatggtagt-cccta---ttttaaatttcaagcatggtaatagtggttgataggaaaatatggaactgttgataagataacatcttttaacatgtcc--------------------------

upper sequence: LOC_Os02g11050.1 (Oryza sativa), 5'ss of exon 5
lower sequence: Vv04s0008g04690.t01 (Vitis vinifera), 5'ss of exon 5

ACACTGACTGCACCTTCATCAGGGTGTCTGGTTCCGAGTTAGTTCAGAAGTACATTGGTGAGGGTTCTCGGATGGTCCGTGAACTCTTTGTTATGGCCAGgtaaactgagcaa-------aaataccctgagttcttctat-tatagtgaaagcattattggcttgcaatctgaactatagttctacatatgcactctgttgtcagtgtaggcttaattgtttggttaacatattacag-------------------------------------------------------------
|||||||||| ||||| || ||||| ||||| || ||||||||||||||||| |||||||| || ||||| |||||  | ||||| ||||||||||| ||||    | |  |          | ||| ||| || |  ||    ||| | |   ||| ||  ||   ||  | |  | |  |     |  |   ||  ||  |   |    |    ||| |||   |    ||||  |                                                              
ACACTGACTGTACCTTTATAAGGGTTTCTGGCTCTGAGTTAGTTCAGAAGTATATTGGTGAAGGGTCTCGAATGGTTAGAGAACTGTTTGTTATGGCAAGgtttgtttaatatctttagtggaaaccatgacttgtgatacacctagaggatttatttttcactcataagataatattttatatgttacctctcctgggtaattgtttagagtcacatttttttcctgggttattgaattttgttttaaatctcccttttatcttgtccttatggtctcttctctgctgctttattacag

upper sequence: LOC_Os02g11050.1 (Oryza sativa), 5'ss of exon 5
lower sequence: Vv09s0002g05800.t01 (Vitis vinifera), 5'ss of exon 5

ACACTGACTGCACCTTCATCAGGGTGTCTGGTTCCGAGTTAGTTCAGAAGTACATTGGTGAGGGTTCTCGGATGGTCCGTGAACTCTTTGTTATGGCCAGgtaaactgagcaaaaataccctgagttcttctattatagtgaaagcattattggcttgcaatctgaactatagttctacatatgcactctgttgtcagtgtaggcttaattgtttggttaacatattacag
| |||||||| || ||||||||||| |||||||| || || |||||||||||||||||||| || ||  | |||||  | ||||| || || ||||| ||||       | | ||   |  |||  |    |   | |||    |  | | ||      | ||| |||   || | || | ||||  ||| ||       |||| || ||  | ||               
ATACTGACTGTACTTTCATCAGGGTTTCTGGTTCTGAATTGGTTCAGAAGTACATTGGTGAAGGCTCCAGAATGGTTAGAGAACTTTTCGTGATGGCAAGgt-----ttgtataatctctttgaaatgcgatgc-acagtttgtgtttgaatgcgcca-agtctaaacc--aggtttataaatgc-ttctctt-------taggtttgatgctgtga--------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments

ATGC    EST sequence
ATGC    genomic sequence (exon)
ATGC    genomic sequence (truncated intron)

EST: gi|8527682|gb|AU092497.1|AU092497

EST:     CCGTGAACTCTTTGTTATGGCCCAG                         GGAACATGCACCATCCATTATTTTCATGGATGAAATAGACTCCATTGGAC
genomic: CCGTGAACTCTTTGTTATGG-CCAGgtaaactgag ... catattacagGGAACATGCACCATCCATTATTTTCATGGATGAAATAGACTCCATTGGAT

EST: gi|29626059|gb|CB631070.1|CB631070

EST:     ATGGTCCGTGAACTCTTTGTTATGGCCAG                         GGAACATGCACCATCCATTATTTTCATGGATGAAATAGACTCCATTGGATC
genomic: ATGGTCCGTGAACTCTTTGTTATGGCCAGgtaaactgag ... catattacagGGAACATGCACCATCCATTATTTTCATGGATGAAATAGACTCCATTGGATC

EST: gi|58673687|gb|CK062373.1|CK062373

EST:     TACATTGGTGAGGGTTCTCGGATGGTCCGTGAACTCTTTGTTATGGCCAG                         GGAACATGCACCATCCATTATTTTCATGGATGAAATAGACTCCATTGGATC
genomic: TACATTGGTGAGGGTTCTCGGATGGTCCGTGAACTCTTTGTTATGGCCAGgtaaactgag ... catattacagGGAACATGCACCATCCATTATTTTCATGGATGAAATAGACTCCATTGGATC

EST: gi|163918429|gb|EG711419.1|EG711419

EST:     TACATTGGTGAGGGTTCTCGGATGGTCCGTGAACTCTTTGTTATGGCCAG                         GGAACATGCACCATCCATTATTTTCATGGATGAAATAGACTCCATTGGATC
genomic: TACATTGGTGAGGGTTCTCGGATGGTCCGTGAACTCTTTGTTATGGCCAGgtaaactgag ... catattacagGGAACATGCACCATCCATTATTTTCATGGATGAAATAGACTCCATTGGATC

EST: gi|5667189|gb|AU077449.1|AU077449

EST:     TCTTTGTTATGGCCAG                         GGAACATGCACCCATCCATTATTTTCATGGATGAAATAGACTCCATTGGAT
genomic: TCTTTGTTATGGCCAGgtaaactgag ... catattacagGGAACATGCA-CCATCCATTATTTTCATGGATGAAATAGACTCCATTGGAT

EST: gi|29688287|gb|CB684562.1|CB684562

EST:     TACATTGGTGAGGGTTCTCGGATGGTCCGTGAACTCTTTGTTATGGCCAG                         GGAACATGCACCATCCATTATTTTCATGGATGAAATAGACTCCATTGGATC
genomic: TACATTGGTGAGGGTTCTCGGATGGTCCGTGAACTCTTTGTTATGGCCAGgtaaactgag ... catattacagGGAACATGCACCATCCATTATTTTCATGGATGAAATAGACTCCATTGGATC

EST: gi|29678518|gb|CB674793.1|CB674793

EST:     GATGGTCCGTGAACTCTTTGTTATGGCCAG                         GGAACATGCACCATCCATTATTTTCATGGATGAAATAGACTCCATTGGATC
genomic: GATGGTCCGTGAACTCTTTGTTATGGCCAGgtaaactgag ... catattacagGGAACATGCACCATCCATTATTTTCATGGATGAAATAGACTCCATTGGATC

EST: gi|29616715|gb|CB621727.1|CB621727

EST:     TACATTGGTGAGGGTTCTCGGATGGTCCGTGAACTCTTTGTTATGGCCAG                         GGAACATGCACCATCCATTATTTTCATGGATGAAATAGACTCCATTGGATC
genomic: TACATTGGTGAGGGTTCTCGGATGGTCCGTGAACTCTTTGTTATGGCCAGgtaaactgag ... catattacagGGAACATGCACCATCCATTATTTTCATGGATGAAATAGACTCCATTGGATC

EST: gi|38480816|gb|CF964905.1|CF964905

EST:     TACATTGGTGAGGGTTCTCGGATGGTCCGTGAACTCTTTGTTATGGCCAG                         GGAACATGCACCATCCATTATTTTCATGGATGAAATAGACTCCATTGGATC
genomic: TACATTGGTGAGGGTTCTCGGATGGTCCGTGAACTCTTTGTTATGGCCAGgtaaactgag ... catattacagGGAACATGCACCATCCATTATTTTCATGGATGAAATAGACTCCATTGGATC

EST: gi|58599645|gb|CK010173.1|CK010173

EST:     TACATTGGTGAGGGTTCTCGGATGGTCCGTGAACTCTTTGTTATGGCCAN                         GGAACATGCACCATCCATTATTTTCATGGATGAAATAGACTCCATTGGATC
genomic: TACATTGGTGAGGGTTCTCGGATGGTCCGTGAACTCTTTGTTATGGCCAGgtaaactgag ... catattacagGGAACATGCACCATCCATTATTTTCATGGATGAAATAGACTCCATTGGATC

EST: gi|29673581|gb|CB669856.1|CB669856

EST:     TACATTGGTGAGGGTTCTCGGATGGTCCGTGAACTCTTTGTTATGGCCAG                         GGAACATGCACCATCCATTATTTTCATGGATGAAATAGACTCCATTGGATC
genomic: TACATTGGTGAGGGTTCTCGGATGGTCCGTGAACTCTTTGTTATGGCCAGgtaaactgag ... catattacagGGAACATGCACCATCCATTATTTTCATGGATGAAATAGACTCCATTGGATC

EST: gi|58678290|gb|CK066977.1|CK066977

EST:     TACATTGGTGAGGGTTCTCGGATGGTCCGTGAACTCTTTGTTATGGCCAG                         GGAACATGCACCATCCATTATTTTCATGGATGAAATAGACTCCATTGGATC
genomic: TACATTGGTGAGGGTTCTCGGATGGTCCGTGAACTCTTTGTTATGGCCAGgtaaactgag ... catattacagGGAACATGCACCATCCATTATTTTCATGGATGAAATAGACTCCATTGGATC

EST: gi|27576305|gb|CA998999.1|CA998999

EST:     TACATTGGTGAGGGTTCTCGGATGGTCCGTGAACTCTTTGTTATGGCCAG                         GGAACATGCACCATCCATTATTTTCATGGATGAAATAGACTCCATTGGATC
genomic: TACATTGGTGAGGGTTCTCGGATGGTCCGTGAACTCTTTGTTATGGCCAGgtaaactgag ... catattacagGGAACATGCACCATCCATTATTTTCATGGATGAAATAGACTCCATTGGATC

EST: gi|218502167|gb|FG956639.1|FG956639

EST:     CGTGAACTCTTTGTTATGGCCAG                         GGAACATGCACCATCCATTATTTTCATGGATGAAATAGACTCCATTGGATC
genomic: CGTGAACTCTTTGTTATGGCCAGgtaaactgag ... catattacagGGAACATGCACCATCCATTATTTTCATGGATGAAATAGACTCCATTGGATC

EST: gi|29659206|gb|CB655481.1|CB655481

EST:     GTTATGGCCAG                         GGAACATGCACCATCCATTATTTTTCATGGATGAAATAGACTCCATTGGAT
genomic: GTTATGGCCAGgtaaactgag ... catattacagGGAACATGCACCATCCATTA-TTTTCATGGATGAAATAGACTCCATTGGAT

EST: gi|29658747|gb|CB655022.1|CB655022

EST:     GTTATGGCCAG                         GGAACATGCACCATCCATTATTTTCATGGATGAAATAGACTCCATTGGATC
genomic: GTTATGGCCAGgtaaactgag ... catattacagGGAACATGCACCATCCATTATTTTCATGGATGAAATAGACTCCATTGGATC

EST: gi|29687574|gb|CB683849.1|CB683849

EST:     TACATTGGTGAGGGTTCTCGGATGGTCCGTGAACTCTTTGTTATGGCCAG                         GGAACATGCACCATCCATTATTTTCATGGATGAAATAGACTCCATTGGATC
genomic: TACATTGGTGAGGGTTCTCGGATGGTCCGTGAACTCTTTGTTATGGCCAGgtaaactgag ... catattacagGGAACATGCACCATCCATTATTTTCATGGATGAAATAGACTCCATTGGATC

RNA-Seq data

ATGC Supported by RNA-Seq exonic block that spans over the splice site

atgs Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.

Found data for 1 RNA-Seqlibrary.

Block sizes: 74 (upstream exon), 63 (downstream exon)
Score: 79

ACACTGACTGCACCTTCATCAGGGTGTCTGGTTCCGAGTTAGTTCAGAAGTACATTGGTGAGGGTTCTCGGATGGTCCGTGAACTCTTTGTTATGGCCAGgtaaactgag ... catattacagGGAACATGCACCATCCATTATTTTCATGGATGAAATAGACTCCATTGGATCTGCTAGGATGGAGTCTGGAACTGGCAACGGTGACAGTGAAGTCCAGCGA