1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GAAATTCTCACGCCAATGCTATATATGAAACCTTCCTGCCGCAGAACCACAGCAAGCCACATCCAGATTCTACCCAGGAAGAGCGAGAAAAATTCATCAGgtattttattcctctgttagttcgcagcactttcaagtgcagggtatgccattctctcatctgaattcccagatacaggtcaatactttggagcttccct...
species | Oryza sativa |
transcript | LOC_Os02g10480.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AGCAAGCCACATCCAGATTCTACCCAGGAAGAGCGAGAAAAATTCATCAG GTCAAAATATGAGTTACAAGAGTTTCTTGAGCCAAGCCTACGGATNGTTTCEST: gi|87005483|gb|CI285705.1|CI285705
genomic: AGCAAGCCACATCCAGATTCTACCCAGGAAGAGCGAGAAAAATTCATCAGgtattttatt ... aattcttcagGTCAAAATATGAGTTACAAGAGTTTCTTGAGCCAAGCCTACGGATTGTTTC
EST: AGCAAGCCACATCCAGATTCTACCCAGGAAGAGCGAGAAAAATTCATCAG GTCAAAATATGAGTTACAAGAGTTTCTTGAGCCAAGCCTACGGATTGTTTCEST: gi|58656726|gb|CK045406.1|CK045406
genomic: AGCAAGCCACATCCAGATTCTACCCAGGAAGAGCGAGAAAAATTCATCAGgtattttatt ... aattcttcagGTCAAAATATGAGTTACAAGAGTTTCTTGAGCCAAGCCTACGGATTGTTTC
EST: AGCAAGCCACATCCAGATTCTACCCAGGAAGAGCGAGAAAAATTCATCAG GTCAAAATATGAGTTACAAGAGTTTCTTGAGCCAAGCCTACGGATGGTTTC
genomic: AGCAAGCCACATCCAGATTCTACCCAGGAAGAGCGAGAAAAATTCATCAGgtattttatt ... aattcttcagGTCAAAATATGAGTTACAAGAGTTTCTTGAGCCAAGCCTACGGATTGTTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAATTCTCACGCCAATGCTATATATGAAACCTTCCTGCCGCAGAACCACAGCAAGCCACATCCAGATTCTACCCAGGAAGAGCGAGAAAAATTCATCAGgtattttattcctctgttagttcgcagcactttcaagtgcagggtatgccattctctcatctgaattcccagatacaggtcaatactttggagcttccct
- - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA