1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
AGGGCAAGGCCATCCAACAGGAGATTCTCGACCTTATTTTGGTCCTTCTAAGAAGCTTGATTTTGAACTTGAGATGgttagtttcttacaaacctcttgactcacagtatttggtattcttgaactgttattgacatacctgttgcatgtttgttaaatttgagctgttggttgtcattgtggtataaaatctggccgtatgtaattagttatagatattttcatttcccctggatcaaatatatcataacgctttgttggcttgttgctttcag
species | Oryza sativa |
transcript | LOC_Os02g10310.3 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CTCGACCTTATTTTGGTCCTTCTAAGAAGCTTGATTTTGAACTTNAGATG GCAGCCATTGTTGGACCAGGGGATGAATTTGGGAAAEST: gi|88324389|gb|CI566202.1|CI566202
genomic: CTCGACCTTATTTTGGTCCTTCTAAGAAGCTTGATTTTGAACTTGAGATGgttagtttct ... ttgctttcagGCAGCCATTGTTGGACCAGGGAATGAATT-GGGAAA
EST: CTCGACCTTATTTTGGTCCTTCTTCTAAGCTTGATTTTGAACTTGACATG GCAGCCATTGTTGGACCACGGAATGAATTGGAAAAAC-TATCGATATTAATEST: gi|27548667|gb|CA766758.2|CA766758
genomic: CTCGACCTTATTTTGGTCCTTCTAAGAAGCTTGATTTTGAACTTGAGATGgttagtttct ... ttgctttcagGCAGCCATTGTTGGACCAGGGAATGAATTGGGAAAACCTATCGATATTAAT
EST: CTCGACCTTATTTTGGTCCTTCTAAGAAGCTTGATTTTGAACTTGAGATG GCAGCCATTGTTGGACCAGGGAATGAATTGGGAAAACCTATCGATATTAAT
genomic: CTCGACCTTATTTTGGTCCTTCTAAGAAGCTTGATTTTGAACTTGAGATGgttagtttct ... ttgctttcagGCAGCCATTGTTGGACCAGGGAATGAATTGGGAAAACCTATCGATATTAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGGCAAGGCCATCCAACAGGAGATTCTCGACCTTATTTTGGTCCTTCTAAGAAGCTTGATTTTGAACTTGAGATGgttagtttcttacaaacctcttgactcacagtatttggtattcttgaactgttattgacatacctgttgcatgtttgttaaatttgagctgttggttgtcattgtggtataaaatctggccgtatgtaattagttatagatattttcatttcccctggatcaaatatatcataacgctttgttggcttgttgctttcag
- - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG