1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TTCCGAGCTTTGGCAGATCAGATATTCCGCAATCCTGACTATCACAAACATGTGAGGAAGTCAGTCGTGAAGCAGgtagttccataactctttcactaattccttagcaaaacttgtttgttttgcaaataaagaagtctctaacttagttacatcatcaatctagtttcttgatatgttctatgctgaattactatctctctggtttag
species | Oryza sativa |
transcript | LOC_Os02g07210.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GTGAGGAAGTCAGTCGTGAAGCAG CTAAAGGAATTCAGGAAACACTATGAAGGCTATGTACCGATGGAATATAAGEST: gi|33683116|gb|CF311355.1|CF311355
genomic: GTGAGGAAGTCAGTCGTGAAGCAGgtagttccat ... tctggtttagCTAAAGGAATTCAGGAAACACTATGAAGGCTATGTACCGATGGAATATAAG
EST: AAACATGTGAGGAAGTCAGTCGTGAAGCAG CTAAAGGAATTCAGGAAACACTATGACGGCTATGTACCGATGGAATATAAGEST: gi|88318193|gb|CI629474.1|CI629474
genomic: AAACATGTGAGGAAGTCAGTCGTGAAGCAGgtagttccat ... tctggtttagCTAAAGGAATTCAGGAAACACTATGAAGGCTATGTACCGATGGAATATAAG
EST: TCCGCAATCCTGACTATCACAAACATGTGAGGAAGTCAGTCGTGAAGCAG CTAAAGGAATTCAGGAAACACTATGAAGGCTATGTACCGATGGAATATAAG
genomic: TCCGCAATCCTGACTATCACAAACATGTGAGGAAGTCAGTCGTGAAGCAGgtagttccat ... tctggtttagCTAAAGGAATTCAGGAAACACTATGAAGGCTATGTACCGATGGAATATAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCCGAGCTTTGGCAGATCAGATATTCCGCAATCCTGACTATCACAAACATGTGAGGAAGTCAGTCGTGAAGCAGgtagttccataactctttcactaattccttagcaaaacttgtttgttttgcaaataaagaagtctctaacttagttacatcatcaatctagtttcttgatatgttctatgctgaattactatctctctggtttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC