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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTCACCGGAAGACCATTATTTCCTGGGAGGAATGTTGTGCACCAGTTAGATCTAATAACAGATCTACTTGGAACTCCATCATCTGAAACTTTATCACGGgtatgccagcttatcacgcaatcacaagaaggagaaatattacttatgagtttgctattttccattgtttcccatgcgagacatattaccttctgtgcta...

Basic information

species Oryza sativa
transcript LOC_Os02g04230.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g04230.2 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G374088_T01 (Zea mays), 5'ss of exon 5
TCTCACCGGAAGACCATTATTTCCTGGGAGGAATGTTGTGCACCAGTTAGATCTAATAACAGATCTACTTGGAACTCCATCATCTGAAACTTTATCACGGgtatgccagcttat---cacgcaatcacaagaaggagaaatattacttatgagtttgctattttccattgtttcccatgcgagacatattaccttctgtgcta
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TCTCACCGGAACGCCATTGTTTCCTGGGAGGAATGTTGTGCACCAATTAGACTTAATAACAGATCTCCTTGGAACACCATCGTTTAGATCCTTATCCCAGgtatgcgaacatatgtatgcataacttcaactattttttctgtcacatacttggtagttttcttttagaacatattttgcgaaa-gtggcataagc-gtaat-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27548236|gb|CA766169.2|CA766169
EST:     ATCTAATAACAGATCTACTTGGAACTCCATCATCTGAAACTTTATCACGG                         ATTCGTAATGAGAATGCCAGGGGATATTTAACTGGCATGCAGAGGAAACAT
genomic: ATCTAATAACAGATCTACTTGGAACTCCATCATCTGAAACTTTATCACGGgtatgccagc ... acacctgcagATTCGTAATGAGAATGCCAGGGGATATTTAACTGGCATGCAGAGGAAACAT
EST: gi|58655691|gb|CK044371.1|CK044371
EST:     ATCTAATAACAGATCTACTTGGAACTCCATCATCTGAAACTTTATCACGG                         ATTCGTAATGAGAATGCCAGGGGATATTTAACTGGCATGCAGAGGAAACAT
genomic: ATCTAATAACAGATCTACTTGGAACTCCATCATCTGAAACTTTATCACGGgtatgccagc ... acacctgcagATTCGTAATGAGAATGCCAGGGGATATTTAACTGGCATGCAGAGGAAACAT
EST: gi|33677513|gb|CF305752.1|CF305752
EST:     ATCTAATAACAGATCTACTTGGAACTCCATCATCTGAAACTTTATCACGG                         ATTCGTAATGAGAATGCCAGGGGATATTTAACTGGCATGCAGAGGAAACAT
genomic: ATCTAATAACAGATCTACTTGGAACTCCATCATCTGAAACTTTATCACGGgtatgccagc ... acacctgcagATTCGTAATGAGAATGCCAGGGGATATTTAACTGGCATGCAGAGGAAACAT