1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GACATGGTTGACTATCAACGAACTCTGGCAAGAGAGATTGAGGCCCGCTTAGAAGCCAAGTGTGATGCTTTAGCTGATCTGTTTGCAATGGATGAAAGGGgtcagtttttgaatcttgctatgactaccaatttcactccctgcgttcctgtccattttatgcaatgcaacttgggcaacttagttttagacaacagtacacatcttgtattcaatattattgttttagcttaacatttcaaatgtgctgcag
species | Oryza sativa |
transcript | LOC_Os02g02690.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AGAAGCCAAGTGTGATGCTTTAGCTGATCTGTTTGCAATGGATGAAAGGG ATTCATCATCCATTAGTCAGATTTCAAGTGCCAGACTTCCAGAAAGEST: gi|396941424|gb|HO188633.1|HO188633
genomic: AGAAGCCAAGTGTGATGCTTTAGCTGATCTGTTTGCAATGGATGAAAGGGgtcagttttt ... tgtgctgcagATTCATCATCCATTAGTCAGATTTCAAGTGCCAGACTTCCAGAAAG
EST: AGAAGCCAAGTGTGATGCTTTAGCTGATCTGTTTGCAATGGATGAAAGGG ATTCATCATCCATTAGTCAGATTTCAAGTGCCAGACTTCCAGAAAGEST: gi|86502560|gb|CI145193.1|CI145193
genomic: AGAAGCCAAGTGTGATGCTTTAGCTGATCTGTTTGCAATGGATGAAAGGGgtcagttttt ... tgtgctgcagATTCATCATCCATTAGTCAGATTTCAAGTGCCAGACTTCCAGAAAG
EST: AGAAGCCAAGTGTGATGCTTTAGCTGATCTGTTTGCAATGGATGAAAGGG ATTCATCATCCATTAGTCAGATTTCAAG-GCCAGACTTCCAGAAAG
genomic: AGAAGCCAAGTGTGATGCTTTAGCTGATCTGTTTGCAATGGATGAAAGGGgtcagttttt ... tgtgctgcagATTCATCATCCATTAGTCAGATTTCAAGTGCCAGACTTCCAGAAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GACATGGTTGACTATCAACGAACTCTGGCAAGAGAGATTGAGGCCCGCTTAGAAGCCAAGTGTGATGCTTTAGCTGATCTGTTTGCAATGGATGAAAGGGgtcagtttttgaatcttgctatgactaccaatttcactccctgcgttcctgtccattttatgcaatgcaacttgggcaacttagttttagacaacagtacacatcttgtattcaatattattgttttagcttaacatttcaaatgtgctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT