1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TTGGAATCAGGAGAAAAAGGATGGGTGAAAGTAGCAGATTGGAACAGTTTTAAAACTGgtaatcttggacatttttatcactcgtaaccgcaaaataaatctggagccctgatctgtacattcttgtactcaatatgttaattcgcttatcctgttta...
species | Oryza sativa |
transcript | LOC_Os02g02524.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AGGAGATAAAGGATGGGTGAAAGTAGCAGATTGGAACAGTTTTAAAACTG AAAAGAAGGCCGCAGCACGAGCACACTCCAAAAATTTATCCTCATTCTGTGEST: gi|88836249|gb|CI371354.1|CI371354
genomic: AGGAGAAAAAGGATGGGTGAAAGTAGCAGATTGGAACAGTTTTAAAACTGgtaatcttgg ... tcttttgtagAAAAGAAGGCCGCAGCACGAGCACACTCCAAAAATTTATCCTCATTCTGTG
EST: ACAGTTTTAAAACT- AAAAGAAGGCCGCAGCACGAGCACACTCCAAAAATTTATCCTCATTCTGTG
genomic: ACAGTTTTAAAACTGgtaatcttgg ... tcttttgtagAAAAGAAGGCCGCAGCACGAGCACACTCCAAAAATTTATCCTCATTCTGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGGAATCAGGAGAAAAAGGATGGGTGAAAGTAGCAGATTGGAACAGTTTTAAAACTGgtaatcttggacatttttatcactcgtaaccgcaaaataaatctggagccctgatctgtacattcttgtactcaatatgttaattcgcttatcctgttta
- - - - AGGAGA
- - - - GGAGAA
- - - - - - - - AGGATG
- - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaataa