1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TATTTACAACTTGGAAGAGTATGTTACTTTGGTAGTGGATGCTACAGTTAAATCAGGGATAATGAGGCAAGTCGAAGCATTTAGATCAGGATTTAACCAGgtgcaacgtcattttctctctcttgtaatcattttattagctgtttttttttgtttactgtaattgttcatgtttacctttctgttttag
species | Oryza sativa |
transcript | LOC_Os02g01170.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AATCAGGGATAATGAGGCAAGTCGAAGCATTTAGATCAGGATTTAACCAG GTCTTTGACATCTCATCCCTGAAAATATTTTCACCTGAAGAGCTTGACTATEST: gi|29678536|gb|CB674811.1|CB674811
genomic: AATCAGGGATAATGAGGCAAGTCGAAGCATTTAGATCAGGATTTAACCAGgtgcaacgtc ... tctgttttagGTCTTTGACATCTCATCCCTGAAAATATTTTCACCTGAAGAGCTTGACTAT
EST: ATAATGAGGCAAGTCGAAGCATTTAGATCAGGATTTAACCAG GTCTTTGACATCTCATCCCTGAAAATATTTTCACCTGAAGAGCTTGACTATEST: gi|12623168|gb|AU173381.1|AU173381
genomic: ATAATGAGGCAAGTCGAAGCATTTAGATCAGGATTTAACCAGgtgcaacgtc ... tctgttttagGTCTTTGACATCTCATCCCTGAAAATATTTTCACCTGAAGAGCTTGACTAT
EST: AATCAGGGATAATGAGGCAAGTCGAAGCATTTAGATCAGGATTTAACCAG GTCTTTGACATCTCATCCCTGAAAATATTTTCACCTGAAGAGCTTGACTATEST: gi|428494|gb|D24645.1|D24645
genomic: AATCAGGGATAATGAGGCAAGTCGAAGCATTTAGATCAGGATTTAACCAGgtgcaacgtc ... tctgttttagGTCTTTGACATCTCATCCCTGAAAATATTTTCACCTGAAGAGCTTGACTAT
EST: AATCAGGGNTAATGAGGCAAGTCGAAGCATTTAGATCAGGNTTTAACCAG GTCTTTGACATCTCATCCCTGAAAATATTTTCACCTGAAGAGCTTGACTATEST: gi|66922255|gb|CX109103.1|CX109103
genomic: AATCAGGGATAATGAGGCAAGTCGAAGCATTTAGATCAGGATTTAACCAGgtgcaacgtc ... tctgttttagGTCTTTGACATCTCATCCCTGAAAATATTTTCACCTGAAGAGCTTGACTAT
EST: AATCAGGGATAATGAGGCAAGTCGAAGCATTTAGATCAGGATTTAACCAG GTCTTTGACATCTCATCCCTGAAAATATTTTCACCTGAAGAGCTTGACTATEST: gi|33793172|gb|CF322467.1|CF322467
genomic: AATCAGGGATAATGAGGCAAGTCGAAGCATTTAGATCAGGATTTAACCAGgtgcaacgtc ... tctgttttagGTCTTTGACATCTCATCCCTGAAAATATTTTCACCTGAAGAGCTTGACTAT
EST: AATCAGGGATAATGAGGCAAGTCGAAGCATTTAGATCAGGATTTAACCAG GTCTTTGACATCTCATCCCTGAAAATATTTTCACCTGAAGAGCTTGACTAT
genomic: AATCAGGGATAATGAGGCAAGTCGAAGCATTTAGATCAGGATTTAACCAGgtgcaacgtc ... tctgttttagGTCTTTGACATCTCATCCCTGAAAATATTTTCACCTGAAGAGCTTGACTAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TATTTACAACTTGGAAGAGTATGTTACTTTGGTAGTGGATGCTACAGTTAAATCAGGGATAATGAGGCAAGTCGAAGCATTTAGATCAGGATTTAACCAGgtgcaacgtcattttctctctcttgtaatcattttattagctgtttttttttgtttactgtaattgttcatgtttacctttctgttttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA