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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCGAGGGCTTCAAGATGAACTTGATCTACTACGACCTGTATCAGTCCACGCGCCTTGAGAAATTCGTCACAGgtatgcatccaattttatagtactggctagttaatttgtactccctccgttctaaattgatctacatatttcataggtacaccaagatcaataaaaacta...

Basic information

species Oryza sativa
transcript LOC_Os02g01150.4
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|38477990|gb|CF962123.1|CF962123
EST:     GATCTACTACGACCTGTATCAGTCCACGCGCCTTGAGAAATTCGTCACAG                         CTTACGGGCAGTTCCTGAAAGCAAACGGAGAGCAGCGCTGTGACATGGAAG
genomic: GATCTACTACGACCTGTATCAGTCCACGCGCCTTGAGAAATTCGTCACAGgtatgcatcc ... atgcatgtagCTTACGGGCAGTTCCTGAAAGCAAACGGAGAGCAGC-CTGTGACATGGAAG
EST: gi|58693460|gb|CK082147.1|CK082147
EST:     GATCTACTACGACCTGTATCAGTCCACGCGCCTTGAGAAATTCGTCACAG                         CTTACGGGCAGTTCCTGAAAGCAAACGGAGAGCAGCCTGTGACATGGAAGA
genomic: GATCTACTACGACCTGTATCAGTCCACGCGCCTTGAGAAATTCGTCACAGgtatgcatcc ... atgcatgtagCTTACGGGCAGTTCCTGAAAGCAAACGGAGAGCAGCCTGTGACATGGAAGA
EST: gi|10794734|gb|AU108700.1|AU108700
EST:     GATCTACTACGACCTGTATCAGTCCACGCGCCTTGAGAAATTCGTCACAG                         CTTACGGGCAGTTCCTGAAAGCAAACGGAGAGCAGCCTGTGACATGGAAGA
genomic: GATCTACTACGACCTGTATCAGTCCACGCGCCTTGAGAAATTCGTCACAGgtatgcatcc ... atgcatgtagCTTACGGGCAGTTCCTGAAAGCAAACGGAGAGCAGCCTGTGACATGGAAGA
EST: gi|11442863|gb|BF430762.1|BF430762
EST:     GATCTACTACGACCTGTATCAGTCCACGCGCCTTGAGAAATTCGTCACAG                         CTTACGGGCAGTTCCTGAAAGCAAACGGAGAGCAGCCTGTGACATGGAAGA
genomic: GATCTACTACGACCTGTATCAGTCCACGCGCCTTGAGAAATTCGTCACAGgtatgcatcc ... atgcatgtagCTTACGGGCAGTTCCTGAAAGCAAACGGAGAGCAGCCTGTGACATGGAAGA
EST: gi|86906454|gb|CI294577.1|CI294577
EST:     AGTCCACGCGCCTTGAGAAATTCGTCACAG                         CTTACGGGCAGTTCCTGAAAGCAAACGGAGAGCAGCCTGTGACATGGAAGA
genomic: AGTCCACGCGCCTTGAGAAATTCGTCACAGgtatgcatcc ... atgcatgtagCTTACGGGCAGTTCCTGAAAGCAAACGGAGAGCAGCCTGTGACATGGAAGA
EST: gi|38481826|gb|CF965897.1|CF965897
EST:     GATCTACTACGACCTGTATCAGTCCACGCGCCTTGAGAAATTCGTCACAG                         CTTACGGGCAGTTCCTGAAAGCAAACGGAGAGCAGCCTGTGACATGGAAGA
genomic: GATCTACTACGACCTGTATCAGTCCACGCGCCTTGAGAAATTCGTCACAGgtatgcatcc ... atgcatgtagCTTACGGGCAGTTCCTGAAAGCAAACGGAGAGCAGCCTGTGACATGGAAGA