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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATAATCCTGTACATCGAACTGTATgtaagtacttattactaataagccattttcaatcgaaattgctacgtgctagtccccagggaatgaattcatacaattaacacacatcaacttcatatcc...

Basic information

species Oryza sativa
transcript LOC_Os02g01100.2
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88574161|gb|CI665930.1|CI665930
EST:     GATAATCCTGTACATCGAACTGTAT                         GCCTGTTGCATTGAGTATTTGATATTGGAGAGCGACAATTTGTCAAAGTTA
genomic: GATAATCCTGTACATCGAACTGTATgtaagtactt ... actgtttcagGCCTGTTGCATTGAGTATTTGATATTGGAGAGCGACAATTTGTCAAAGTTA
EST: gi|88327908|gb|CI648307.1|CI648307
EST:     GATAATCCTGTACATCGAACTGTAT                         GCCTGTTGCATTGAGTATTTGATATTGGAGAGCGACAATTTGTCAAAGTTA
genomic: GATAATCCTGTACATCGAACTGTATgtaagtactt ... actgtttcagGCCTGTTGCATTGAGTATTTGATATTGGAGAGCGACAATTTGTCAAAGTTA