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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGACACTAAACTCTCATGTGTTCTTCGCAATCTTGACCACCCTCATAGTCATGCCAACCACTTGGCTCCGCGACCTTAGCTGTCTGAGTTATCTTTCAGgtttgcatttccttgcttcttctgttcatcttactgggtctagagttgtttaaataacatgcacgttatttgttgtgccttatgtatgtactgcacatcgtctcatgatgttgttgtgtttgtag

Basic information

species Oryza sativa
transcript LOC_Os02g01100.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g01100.2 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G134888_T01 (Zea mays), 5'ss of exon 5
ATGACACTAAACTCTCATGTGTTCTTCGCAATCTTGACCACCCTCATAGTCATGCCAACCACTTGGCTCCGCGACCTTAGCTGTCTGAGTTATCTTTCAGgtttgcatttc-cttgcttcttctgttcatcttactgggtctagagttgtttaaataacatgcacgttatttgttgtgccttatgtatgtactgcacatcgtctcatgatgttgttgtgtttgtag
|||||||| ||||| ||||| || || ||||||||||| ||| ||||||||||||||||||| |||||||| ||||| ||||| ||||| ||  |||||||| |  ||||  |  ||||||  | ||| | | |||   | ||   |  || |  ||     |||  ||||  |  |  | | ||| ||| |||      |                         
ATGACACTGAACTCACATGTATTTTTTGCAATCTTGACTACCATCATAGTCATGCCAACCACCTGGCTCCGTGACCTGAGCTGGCTGAGCTACATTTCAGgtctcaattttgccggcttctctttttcttttaactctttgtacc-tgattcatgtattgcacactatattgatgctagcat-tgtttgt-ctgtctccag-------------------------

upper sequence: LOC_Os02g01100.2 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G105192_T04 (Zea mays), 5'ss of exon 5
ATGACACTAAACTCTCATGTGTTCTTCGCAATCTTGACCACCCTCATAGTCATGCCAACCACTTGGCTCCGCGACCTTAGCTGTCTGAGTTATCTTTCAGgtttgcatttccttgcttctt--ctgttcatcttactgggtctag--agtt-gtttaaataacatgcacgttatttgt---tgtgccttatgtatgtactgcacatcgtctcatgatgttgttgtgtttgtag
 ||||| | ||||| |||||  | ||| |||||||||| ||| ||||||||||||| ||||||||||| || ||||||||||| ||||| || ||||||||| | |||||   || | |||  |  ||    | ||   |  | |  |||  || |  ||    ||||  |  ||      | | || | |   |||||  | ||| || ||    | | |||||||||||||
TTGACAATGAACTCCCATGTACTTTTCACAATCTTGACTACCATCATAGTCATGCCGACCACTTGGCTTCGTGACCTTAGCTGCCTGAGCTACCTTTCAGgtctccatttatctgttgctttgcattttggttgacaatgcattgtcagtcagtgtgtattctttgcatttagttcagatgtctaccctcttggtgtaccactcatggtttctcactat-gttgtgtttgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88728967|gb|CI752477.1|CI752477
EST:     CATGCCAACCACTTGGCTCCGCGACCTTAGCTGTCTGAGTTATCTTTCAG                         CTGGGGGTGTCATTGCATCAATCCTTGTANTTGTCTGCCTATGCTGGGTTG
genomic: CATGCCAACCACTTGGCTCCGCGACCTTAGCTGTCTGAGTTATCTTTCAGgtttgcattt ... gtgtttgtagCTGGGGGTGTCATTGCATCAATCCTTGTAGTTGTCTGCCTATGCTGGGTTG