Sequence
atgc intronic sequence ATGC exonic sequenceGGGTTTTGAAACTGACCGCTTAAAAACTGGCACACCACCACGAATTGATCGCAGGACTGTTAACTTTTCTGGATTGGAACCCCAGCATGGTGATGAAGAGgtatggaacatctgacaatatgtatgagtgaagttttttgttattcgttatatacaagtgtcatcttccacttgtatctgaaaatgcaaattccgtcatt...
Basic information
species | Oryza sativa |
transcript | LOC_Os01g72980.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: LOC_Os01g72980.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G481548_T01 (Zea mays), 5'ss of exon 5
GGGTTTTGAAACTGACCGCTTAAAAACTGGCACACCACCACGAATTGATCGCAGGACTGTTAACTTTTCTGGATTGGAACCCCAGCATGGTGATGAAGAGgtatggaacatctgacaatatgtatg-agtgaagttttttgttattcgttatatacaagtgtcatcttccacttgtatctgaaaatgcaaattccgtcatt
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GGGTTTTGAAACTGACCGCTTGAAAACCGGTACACCACCACGAATTGATCGCAGAACAGTTGATTTTTCTGGATTGGAACCCCAGCATGGTGATGAAGAGgtatatagtacagaacagaattttcccacttatattgagaaatgcatattcaataatgcaatagcttttcattactgtcttttc-tattcattttgatttg
upper sequence: LOC_Os01g72980.1 (Oryza sativa), 5'ss of exon 5
lower sequence: Vv04s0044g01690.t01 (Vitis vinifera), 5'ss of exon 5
GGGTTTTGAAACTGACCGCTTAAAAACTGGCACACCACCACGAATTGATCGCAGGACTGTTAACTTTTCTGGATTGGAACCCCAGCATGGTGATGAAGAGgtatggaacatctgacaatatgtatgagtgaagttttttgttattcgttatatacaagtgtcatcttccacttgtatctgaaaatgca---aattccgtcatt-
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TGGATTTGAAACTGACCGGTTAAAAACTGGAACCCCTGCACGTGTGGACTGTCGTACTGTAGATTTCTCTGGATTGGAACCCCAGCATGGAGATGAAGAGgtccttc-catttaatttcatatgtaggttaa---ctagattttttcccctgcataactggagttttcaaataatgttttgcaattgactcaatccaaacatatMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|29627072|gb|CB632083.1|CB632083EST: GCAGGACTGTTAACTTTTCTGGATTGGAACCCCAGCATGGTGATGAAGAG GTTGGCTGGTTTAGTTTTGATCCTGAATTCCATATTGAGAGGGACCANATG
genomic: GCAGGACTGTTAACTTTTCTGGATTGGAACCCCAGCATGGTGATGAAGAGgtatggaaca ... ctttaaacagGTTGGCTGGTTTAGTTTTGATCCTGAATTCCATATTGAGAGGGACCAAATG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGGTTTTGAAACTGACCGCTTAAAAACTGGCACACCACCACGAATTGATCGCAGGACTGTTAACTTTTCTGGATTGGAACCCCAGCATGGTGATGAAGAGgtatggaacatctgacaatatgtatgagtgaagttttttgttattcgttatatacaagtgtcatcttccacttgtatctgaaaatgcaaattccgtcatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA