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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGACATCTTGGAGGCAACTTATCCTGCTGTTGCGAAGAGATTACATGGAGACTGGATTCGTGATCCAGCGATACCTATTGTTACTGGGTTCCTTGGGAAGgtattctcaccagagggtattcattatgaagcaaactattagttcattgtaattgttattaccttttcttttagaagtcaatcgtcatcacttgcag

Basic information

species Oryza sativa
transcript LOC_Os01g70300.3
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g70300.2 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G300862_T05 (Zea mays), 5'ss of exon 5
GGACATCTTGGAGGCAACTTATCCTGCTGTTGCGAAGAGATTACATGGAGACTGGATTCGTGATCCAGCGATACCTATTGTTACTGGGTTCCTTGGGAAGgtattctcaccagagggta--ttcattatgaagcaaactattagttcattgtaattgttattaccttttcttttagaagtcaatcgtcatcacttgcag
||| ||||| || ||||| ||||||||||||||||||||| | ||||| |||||||| |  ||||||||||||||| |||||||||||||||||||||||||||| ||| |       |  ||| | ||  |  |  | | | ||| | || || ||  || || |                                 
GGATATCTTAGAAGCAACCTATCCTGCTGTTGCGAAGAGACTTCATGGGGACTGGATACAGGATCCAGCGATACCTGTTGTTACTGGGTTCCTTGGGAAGgtatt-tcatcgacaaacaatttcttcatccatgaggcaacttgtttactgcaactgccatcacttgcag-----------------------------

upper sequence: LOC_Os01g70300.2 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM5G866647_T01 (Zea mays), 5'ss of exon 2
GGACATCTTGGAGGCAACTTATCCTGCTGTTGCGAAGAGATTACATGGAGACTGGATTCGTGATCCAGCGATACCTATTGTTACTGGGTTCCTTGGGAAGgtattctcaccagagggta--ttcattatgaagcaaactattagttcattgtaattgttattaccttttcttttagaagtcaatcgtcatcacttgcag
||| ||||| || ||||| ||||||||||||||||||||| | ||||| |||||||| |  ||||||||||||||| ||||||||||||||||||||||||||| ||||         |  ||| | ||  |  |  | | | ||| | || ||  |  || || |                                 
GGATATCTTAGAAGCAACCTATCCTGCTGTTGCGAAGAGACTTCATGGGGACTGGATACAGGATCCAGCGATACCTGTTGTTACTGGGTTCCTTGGGAAGgtat-ctcattgacaaacaatttcttcatccatgaggcaacttgtttactgcaaccgccatcacttgcag-----------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58669471|gb|CK058157.1|CK058157
EST:     ACTGGATTCGTGATCCAGCGATACCTATTGTTACTGGGTTCCTTGGGAAG                         GGCTGGAAATCAGGCGCTGTAACCACTTTAGGCCGAGGTGGCAGTGACTTG
genomic: ACTGGATTCGTGATCCAGCGATACCTATTGTTACTGGGTTCCTTGGGAAGgtattctcac ... tcacttgcagGGCTGGAAATCAGGCGCTGTAACCACTTTAGGCCGAGGTGGCAGTGACTTG
EST: gi|29669913|gb|CB666188.1|CB666188
EST:     ACTGGATTCGTGATCCAGCGATACCTATTGTTACTGGGTTCCTTGGGAAG                         GGCTGGAAATCAGGCGCTGTAACCACTTTAGGCCGAGGTGGCAGTGACTTG
genomic: ACTGGATTCGTGATCCAGCGATACCTATTGTTACTGGGTTCCTTGGGAAGgtattctcac ... tcacttgcagGGCTGGAAATCAGGCGCTGTAACCACTTTAGGCCGAGGTGGCAGTGACTTG