1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GGAGAGGCTCGGCAAGGCCCTGATGATCCATGTACCCTACATGTTCATGAAGGCCTGGAAGATGATCTACCCTTTCATCGACAATGTCACCAGGGACAAGgtaatgaaatcgatcaaagaacttgaaatcaagtgccaaacaagctctcgcacattagcactacgttttaatttcgttcttacaattctctccttgattaattttggttcaattttctgtctgaaaaaaaaatgcag
species | Oryza sativa |
transcript | LOC_Os01g70210.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AGGCCTGGAAGATGATCTACCCTTTCATCGACAATGTCACCAGGGACAAG TTCGTGTTCGTGGACGACAAGAGCTTGCAAGAGGTGCTGCACCAGGAGATCEST: gi|33665932|gb|CF296899.1|CF296899
genomic: AGGCCTGGAAGATGATCTACCCTTTCATCGACAATGTCACCAGGGACAAGgtaatgaaat ... aaaaatgcagTTCGTGTTCGTGGACGACAAGAGCTTGCAAGAGGTGCTGCACCAGGAGATC
EST: AGGCCTGGAAGATGATTTACCCTTTCATCGACAATGTCACCAGGGGCAAG TTCGTGTTCGTGGACGACAAGAGCTTGCAAGAGGTGCTGCACCAGGAGATCEST: gi|89176897|gb|CI013470.1|CI013470
genomic: AGGCCTGGAAGATGATCTACCCTTTCATCGACAATGTCACCAGGGACAAGgtaatgaaat ... aaaaatgcagTTCGTGTTCGTGGACGACAAGAGCTTGCAAGAGGTGCTGCACCAGGAGATC
EST: AGGCCTGGAAGATGATCTACCCTTTCATCGACAATGTCACCAGGGACAAG TTCGTGTTCGTGGACGACAAGAGCTTGCAAGAGGTGCTGCACCAGGAGATCEST: gi|88847573|gb|CI016066.1|CI016066
genomic: AGGCCTGGAAGATGATCTACCCTTTCATCGACAATGTCACCAGGGACAAGgtaatgaaat ... aaaaatgcagTTCGTGTTCGTGGACGACAAGAGCTTGCAAGAGGTGCTGCACCAGGAGATC
EST: AGGCCTGGAAGATGATCTACCCTTTCATCGACAATGTCACCAGGGACAAG TTCGTGTTCGTGGACGACAAGAGCTTGCAAGAGGTGCTGCACCAGGAGATCEST: gi|86525746|gb|CI165952.1|CI165952
genomic: AGGCCTGGAAGATGATCTACCCTTTCATCGACAATGTCACCAGGGACAAGgtaatgaaat ... aaaaatgcagTTCGTGTTCGTGGACGACAAGAGCTTGCAAGAGGTGCTGCACCAGGAGATC
EST: AAGATGATCTACCCTTTCATCGACAATGTCACCAGGGACAAG TTCGTGTTCGTGGACGACAAGAGCTTGCAAGAGGTGCTGCACCAGGAGATCEST: gi|88269525|gb|CI380823.1|CI380823
genomic: AAGATGATCTACCCTTTCATCGACAATGTCACCAGGGACAAGgtaatgaaat ... aaaaatgcagTTCGTGTTCGTGGACGACAAGAGCTTGCAAGAGGTGCTGCACCAGGAGATC
EST: AGGCCTGGAAGATGATCTACCCTTTCATCGACAATGTCACCAGGGACAAG TTCGTGTTCGTGGACGACAAGAGCTTGCAAGAGGTGCTGCACCAGGAGATCEST: gi|88203980|gb|CI203829.1|CI203829
genomic: AGGCCTGGAAGATGATCTACCCTTTCATCGACAATGTCACCAGGGACAAGgtaatgaaat ... aaaaatgcagTTCGTGTTCGTGGACGACAAGAGCTTGCAAGAGGTGCTGCACCAGGAGATC
EST: AGATGATCTACCCTTTCATCGACAATGTCACCAGGGACAAG TTCGTGTTCGTGGACGACAAGAGCTTGCAAGAGGTGCTGCACCAGGAGATCEST: gi|27577459|gb|CB000154.1|CB000154
genomic: AGATGATCTACCCTTTCATCGACAATGTCACCAGGGACAAGgtaatgaaat ... aaaaatgcagTTCGTGTTCGTGGACGACAAGAGCTTGCAAGAGGTGCTGCACCAGGAGATC
EST: AGGCCTGGAAGATGATCTACCCTTTCATCGACAATGTCACCAGGGACAAG TTCGTGTTCGTGGACGACAAGAGCTTGCAAGAGGTGCTGCACCAGGAGATCEST: gi|88200125|gb|CI199975.1|CI199975
genomic: AGGCCTGGAAGATGATCTACCCTTTCATCGACAATGTCACCAGGGACAAGgtaatgaaat ... aaaaatgcagTTCGTGTTCGTGGACGACAAGAGCTTGCAAGAGGTGCTGCACCAGGAGATC
EST: AGGCCTGGAAGATGATCTACCCTTTCATCGACAATGTCACCAGGGACAAG TTCGTGTTCGTGGACGACAAGAGCTTGCAAGAGGTGCTGCACCAGGAGATCEST: gi|33666129|gb|CF297096.1|CF297096
genomic: AGGCCTGGAAGATGATCTACCCTTTCATCGACAATGTCACCAGGGACAAGgtaatgaaat ... aaaaatgcagTTCGTGTTCGTGGACGACAAGAGCTTGCAAGAGGTGCTGCACCAGGAGATC
EST: AGGCCTGGAAGATGATCTACCCTTTCATCGACAATGTCACCAGGGGCAAG TTCGTGTTCGTGGACGACAAGAGCTTGCAAGAGGTGCTGCACCAGGAGATCEST: gi|88258593|gb|CI361179.1|CI361179
genomic: AGGCCTGGAAGATGATCTACCCTTTCATCGACAATGTCACCAGGGACAAGgtaatgaaat ... aaaaatgcagTTCGTGTTCGTGGACGACAAGAGCTTGCAAGAGGTGCTGCACCAGGAGATC
EST: AGGCCTGGAAGATGATCTACCCTTTCATCGACAATGTCACCAGGGACAAG TTCGTGTTCGTGGACGACAAGAGCTTGCAAGAGGTGCTGCACCAGGAGATCEST: gi|33677265|gb|CF305504.1|CF305504
genomic: AGGCCTGGAAGATGATCTACCCTTTCATCGACAATGTCACCAGGGACAAGgtaatgaaat ... aaaaatgcagTTCGTGTTCGTGGACGACAAGAGCTTGCAAGAGGTGCTGCACCAGGAGATC
EST: AGGCCTGGAAGATGATCTACCCTTTCATCGACAATGTCACCAGGGGCAAG TTCGTGTTCGTEST: gi|86601296|gb|CI251670.1|CI251670
genomic: AGGCCTGGAAGATGATCTACCCTTTCATCGACAATGTCACCAGGGACAAGgtaatgaaat ... aaaaatgcagTTCGTGTTCGT
EST: AGGCCTGGAAGATGATCTACCCTTTCATCGACAATGTCACCAGGGACAAG TTCGTGTTCGTGGACGACAAGAGCTTGCAAGAGGTGCTGCACCAGGAGATCEST: gi|86413397|gb|CI067802.1|CI067802
genomic: AGGCCTGGAAGATGATCTACCCTTTCATCGACAATGTCACCAGGGACAAGgtaatgaaat ... aaaaatgcagTTCGTGTTCGTGGACGACAAGAGCTTGCAAGAGGTGCTGCACCAGGAGATC
EST: AGGCCTGGAAGATGATCTACCCTTTCATCGACAATGTCACCAGGGACAAG TTCGTGTTCGTGGACGACAAGAGCTTGCAAGAGGTGCTGCACCAGGAGATCEST: gi|33662282|gb|CF293249.1|CF293249
genomic: AGGCCTGGAAGATGATCTACCCTTTCATCGACAATGTCACCAGGGACAAGgtaatgaaat ... aaaaatgcagTTCGTGTTCGTGGACGACAAGAGCTTGCAAGAGGTGCTGCACCAGGAGATC
EST: AGGCCTGGAAGATGATCTACCCTTTCATCGACAATGTCACCAGGGGCAAG TTCGTGTTCGTGGACGACAAGAGCTTGCAAGAGGTGCTGCACCAGGAGATCEST: gi|88985097|gb|CI011948.1|CI011948
genomic: AGGCCTGGAAGATGATCTACCCTTTCATCGACAATGTCACCAGGGACAAGgtaatgaaat ... aaaaatgcagTTCGTGTTCGTGGACGACAAGAGCTTGCAAGAGGTGCTGCACCAGGAGATC
EST: AGGCCTGGAAGATGATCTACCCTTTCATCGACAATGTCACCAGGGACAAG TTCGTGTTCGTGGACGACAAGAGCTTGCAAGAGGTGCTGCACCAGGAGATCEST: gi|11565074|gb|AU165710.1|AU165710
genomic: AGGCCTGGAAGATGATCTACCCTTTCATCGACAATGTCACCAGGGACAAGgtaatgaaat ... aaaaatgcagTTCGTGTTCGTGGACGACAAGAGCTTGCAAGAGGTGCTGCACCAGGAGATC
EST: AGGCCTGGAAGATGATCTACCCTTTCATCGACAATGTCACCAGGGACAAG TTCGTGTTCGTGGACGACAAGAGCTTGCAAGAGGTGCTGCACCAGGAGATCEST: gi|18385341|gb|BM418540.1|BM418540
genomic: AGGCCTGGAAGATGATCTACCCTTTCATCGACAATGTCACCAGGGACAAGgtaatgaaat ... aaaaatgcagTTCGTGTTCGTGGACGACAAGAGCTTGCAAGAGGTGCTGCACCAGGAGATC
EST: AGGCCTGGAAGATGATCTACCCTTTCATCGACAATGTCACCAGGGACAAG TTCGTGTTCGTGGACGACAAGAGCTTGCAAGAGGTGCTGCACCAGGAGATC
genomic: AGGCCTGGAAGATGATCTACCCTTTCATCGACAATGTCACCAGGGACAAGgtaatgaaat ... aaaaatgcagTTCGTGTTCGTGGACGACAAGAGCTTGCAAGAGGTGCTGCACCAGGAGATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAGAGGCTCGGCAAGGCCCTGATGATCCATGTACCCTACATGTTCATGAAGGCCTGGAAGATGATCTACCCTTTCATCGACAATGTCACCAGGGACAAGgtaatgaaatcgatcaaagaacttgaaatcaagtgccaaacaagctctcgcacattagcactacgttttaatttcgttcttacaattctctccttgattaattttggttcaattttctgtctgaaaaaaaaatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG