1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GACCAAGGGTTACTAGGTATGTGTGTCGGTGAAAAGAGGAAGCTAAAGATACCTGCAAAGATGGGTTATGGGGAGAGAGGCTCCCCACCGAAGATTCCAGgtatggtctgaatatttgtttgtttgcttgatggtttcttgtgaaagaattatccatgtgtagattctcaactttgacatggctattttaccatgtttcacacctacattttacattgccaacagggcatgtgataagttttttcccatttacctataatactgacatacggtttcgtaaccaatag
species | Oryza sativa |
transcript | LOC_Os01g68710.2 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: ACCTGCAAAGATGGGTTATGGGGAGAGAGGCTCCCCACCGAAGATTCCAG GTGGAGCAACACTAATCTTTGACACGGAGCTT--CGCCGTCAATGGAAAGAEST: gi|51946051|gb|CV152392.1|CV152392
genomic: ACCTGCAAAGATGGGTTATGGGGAGAGAGGCTCCCCACCGAAGATTCCAGgtatggtctg ... taaccaatagGTGGAGCAACACTAATCTTTGACACGGAGCTTATCGCCGTCAATGGAAAGA
EST: ACCTGCAAAGATGGGTTATGGGGAGAGAGGCTCCCCACCGAAGATTCCAG GTGGAGCAACACTAATCTTTGACACGGAGCTTATCGCCGTCAATGGAAAGAEST: gi|55440369|gb|CV733494.1|CV733494
genomic: ACCTGCAAAGATGGGTTATGGGGAGAGAGGCTCCCCACCGAAGATTCCAGgtatggtctg ... taaccaatagGTGGAGCAACACTAATCTTTGACACGGAGCTTATCGCCGTCAATGGAAAGA
EST: ACCTGCAAAGATGGGTTATGGGGAGAGAGGCTCCCCACCGAAGATTCCAG GTGGAGCAACACTAATCTTTGACAEST: gi|55436956|gb|CV731667.1|CV731667
genomic: ACCTGCAAAGATGGGTTATGGGGAGAGAGGCTCCCCACCGAAGATTCCAGgtatggtctg ... taaccaatagGTGGAGCAACACTAATCTTTGACA
EST: ACCTGCAAAGATGGGTTATGGGGAGAGAGGCTCCCCACCGAAGATTCCAG GTGGAGCAACACTAATCTTTGACACGGAGCTTATCGCCGTCAATGGAAAGAEST: gi|55409944|gb|CV722320.1|CV722320
genomic: ACCTGCAAAGATGGGTTATGGGGAGAGAGGCTCCCCACCGAAGATTCCAGgtatggtctg ... taaccaatagGTGGAGCAACACTAATCTTTGACACGGAGCTTATCGCCGTCAATGGAAAGA
EST: CCTGCAAAGATGGGTTATGGNGGAGAGAGGCTCCCCACCGAAGATTCCAG GTGGAGCAACACTAATCTTTGACACGGAGCTTATCGCCGTCAATGGAAAGAEST: gi|55438455|gb|CV732524.1|CV732524
genomic: CCTGCAAAGATGGGTTATGG-GGAGAGAGGCTCCCCACCGAAGATTCCAGgtatggtctg ... taaccaatagGTGGAGCAACACTAATCTTTGACACGGAGCTTATCGCCGTCAATGGAAAGA
EST: ACCTGCAAAGATGGGTTATGGGGAGAGAGGCCCCCCACCGAAGATTCCAG GTGGAGCAACACTAATCTTTGACACGGAGCTTATCGCCGTCAATGGAAAGAEST: gi|86829242|gb|CI284927.1|CI284927
genomic: ACCTGCAAAGATGGGTTATGGGGAGAGAGGCTCCCCACCGAAGATTCCAGgtatggtctg ... taaccaatagGTGGAGCAACACTAATCTTTGACACGGAGCTTATCGCCGTCAATGGAAAGA
EST: ACCTGCAAAGATGGGTTATGGGGAGAGAGGCTCCCCACCGAAGATTCCAG GTGGAGCAACACTAATCTTTGACACGGAGCTTATCGCCGTCAATGGAAAGAEST: gi|11171677|gb|AU163906.1|AU163906
genomic: ACCTGCAAAGATGGGTTATGGGGAGAGAGGCTCCCCACCGAAGATTCCAGgtatggtctg ... taaccaatagGTGGAGCAACACTAATCTTTGACACGGAGCTTATCGCCGTCAATGGAAAGA
EST: ACCTGCAAAGATGGGTTATGGGGAGAGAGGCTCCCCACCGAAGATTCCAG GTGGAGCAACACTAATCTTTGACACGGAGCTTATCGCCGTCAATGGAAAGAEST: gi|55436954|gb|CV731666.1|CV731666
genomic: ACCTGCAAAGATGGGTTATGGGGAGAGAGGCTCCCCACCGAAGATTCCAGgtatggtctg ... taaccaatagGTGGAGCAACACTAATCTTTGACACGGAGCTTATCGCCGTCAATGGAAAGA
EST: ACCTGCAAAGATGGGTTATGGGGAGAGAGGCTCCCCACCGAAGATTCCAG GTGGAGCAACACTAATCTTTGACACGGAGCTTATCGCCGTCAATGGAAAGAEST: gi|55433322|gb|CV729734.1|CV729734
genomic: ACCTGCAAAGATGGGTTATGGGGAGAGAGGCTCCCCACCGAAGATTCCAGgtatggtctg ... taaccaatagGTGGAGCAACACTAATCTTTGACACGGAGCTTATCGCCGTCAATGGAAAGA
EST: ACCTGCAAAGATGGGTTATGGGGAGAGAGGCTCCCCACCGAAGATTCCAG GTGGAGCAACACTAATCTTTGACACGGAGCTTATCGCCGTCAATGGAAAGAEST: gi|55413431|gb|CV725807.1|CV725807
genomic: ACCTGCAAAGATGGGTTATGGGGAGAGAGGCTCCCCACCGAAGATTCCAGgtatggtctg ... taaccaatagGTGGAGCAACACTAATCTTTGACACGGAGCTTATCGCCGTCAATGGAAAGA
EST: ACCTGCAAAGATGGGTTATGGGGAGAGAGGCTCCCCACCGAAGATTCCAG GTGGAGCAACACTAATCTTTGACACGGAGCTTATCGCCGTCAATGGAAAGAEST: gi|55414253|gb|CV726629.1|CV726629
genomic: ACCTGCAAAGATGGGTTATGGGGAGAGAGGCTCCCCACCGAAGATTCCAGgtatggtctg ... taaccaatagGTGGAGCAACACTAATCTTTGACACGGAGCTTATCGCCGTCAATGGAAAGA
EST: ACCTGCAAAGATGGGTTATGGGGAGAGAGGCTCCCCACCGAAGATTCCAG GTGGAGCAACACTAATCTTTGACACGGAGCTTATCGCCGTCAATGGAAAGAEST: gi|55441436|gb|CV734038.1|CV734038
genomic: ACCTGCAAAGATGGGTTATGGGGAGAGAGGCTCCCCACCGAAGATTCCAGgtatggtctg ... taaccaatagGTGGAGCAACACTAATCTTTGACACGGAGCTTATCGCCGTCAATGGAAAGA
EST: ACCTGCAAAGATGGGTTATGGGGAGAGAGGCTCCCCACCGAAGATTCCAG GTGGAGCAACACTAATCTTTGACACGGAGCTTATCGCCGTCAATGGAAAGAEST: gi|33685240|gb|CF313479.1|CF313479
genomic: ACCTGCAAAGATGGGTTATGGGGAGAGAGGCTCCCCACCGAAGATTCCAGgtatggtctg ... taaccaatagGTGGAGCAACACTAATCTTTGACACGGAGCTTATCGCCGTCAATGGAAAGA
EST: CCTGCAAAGATGGGTTATGGGGAGGAGAGGCTCCCCACCGAAGATTCCAG GTGGAGCAACACTAATTTTTGACACGGAGCTTATCGCCGTCAATGGAAAGAEST: gi|88242499|gb|CI242348.1|CI242348
genomic: CCTGCAAAGATGGGTTATGGGGAG-AGAGGCTCCCCACCGAAGATTCCAGgtatggtctg ... taaccaatagGTGGAGCAACACTAATCTTTGACACGGAGCTTATCGCCGTCAATGGAAAGA
EST: ACCTGCAAAGATGGGTTATGGGGAGAGAGGCTCCCCACCGAAGATTCCAG GTGGAGCAACACTAATCTTTGACACGGAGCTTATCGCCGTCAATGGAAAGAEST: gi|88276548|gb|CI397350.1|CI397350
genomic: ACCTGCAAAGATGGGTTATGGGGAGAGAGGCTCCCCACCGAAGATTCCAGgtatggtctg ... taaccaatagGTGGAGCAACACTAATCTTTGACACGGAGCTTATCGCCGTCAATGGAAAGA
EST: ACCTGCAAAGATGGGTTATGGGGAGAGAGGCTCCCCACCGAAGATTCCAG GTGGAGCAACACTAATCTTTGACACGGAGCTTATCGCCGTCAATGGAAAGAEST: gi|163928575|gb|EG711160.1|EG711160
genomic: ACCTGCAAAGATGGGTTATGGGGAGAGAGGCTCCCCACCGAAGATTCCAGgtatggtctg ... taaccaatagGTGGAGCAACACTAATCTTTGACACGGAGCTTATCGCCGTCAATGGAAAGA
EST: ACCTGCAAAGATGGGTTATGGGGAGAGAGGCTCCCCACCGAAGATTCCAG GTGGAGCAACACTAATCTTTGACACGGAGCTTATCGCCGTCAATGGAAAGA
genomic: ACCTGCAAAGATGGGTTATGGGGAGAGAGGCTCCCCACCGAAGATTCCAGgtatggtctg ... taaccaatagGTGGAGCAACACTAATCTTTGACACGGAGCTTATCGCCGTCAATGGAAAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GACCAAGGGTTACTAGGTATGTGTGTCGGTGAAAAGAGGAAGCTAAAGATACCTGCAAAGATGGGTTATGGGGAGAGAGGCTCCCCACCGAAGATTCCAGgtatggtctgaatatttgtttgtttgcttgatggtttcttgtgaaagaattatccatgtgtagattctcaactttgacatggctattttaccatgtttcacacctacattttacattgccaacagggcatgtgataagttttttcccatttacctataatactgacatacggtttcgtaaccaatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA