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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATCTTACTAGCCAGCCAAGATACCTTATTACCTTCACAGTTGGATACTCTCAAAAGGCAAATATTGATGCAGCAGTCAAAAAGgtaattacttagacaactagcatgtgtaaactgattgcattgaataagcatacaattgctttgttcaaaatagtcttcagaatagaaaaaaaaaacttatgttcaactataaggcatctatcatgcttaaacagttaactgagacatctatcattcacttcaaatttacatgccttattatatag

Basic information

species Oryza sativa
transcript LOC_Os01g68260.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g68260.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM5G801369_T01 (Zea mays), 5'ss of exon 6
GATCTTACTAGCCAGCCAAGATACCTTATTACCTTCACAGTTGGATACTCTCAAAAGGCAAATATTGATGCAGCAGTCAAAAAGgtaattacttagacaactagcatgtgtaaactgattgcattgaataagcatacaattgcttt----gttcaaaatagtcttcagaatagaaaaaaaaaacttatgttcaactataaggcatctatcatgcttaaacagttaactgagacatctatcattcacttcaaatttacatgccttattatatag
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GATCTTACTACCAAACCAAGATACCTTGTTACATTTACAGTGGGATACTCTCAAAAGGCAAACATTGATGCAGCGGTGAAAAAGgtaa-------gacatcctaaatgcttaaaata--tgcgaggaatga-tatattgtagtttttcagattcacatatgtcttctctacag----------------------------------------------------------------------------------------------------