1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CTTATTGCACTGGCTTGCTTTTGGCTCGCCGTGTGCTCAAGCTCCGTGGTTTGGACCAGGAGTACGAGGGCAATATTGAGgtacaaatacaatccttataaattttttactctatatgctcatgctcatgctgattttgatcttgatatgtatgattcctttggttag
species | Oryza sativa |
transcript | LOC_Os01g67134.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GTGTGCTCAAGCTCCGTGGTTTGGACCAGGAGTACGAGGGCAATATTGAG GCCACTGGGGAGGACTACTATGTTGAACCAGCTGATGAAAGGCGGCCTTTCEST: gi|218502752|gb|FG953444.1|FG953444
genomic: GTGTGCTCAAGCTCCGTGGTTTGGACCAGGAGTACGAGGGCAATATTGAGgtacaaatac ... ctttggttagGCCACTGGGGAGGACTACTATGTTGAACCAGCTGATGAAAGGCGGCCTTTC
EST: GTGTGCTCACGCTCCGTGGTTTGGACCAGGAGTACGAGGGCAATGTTGAG GCCACTGGGGAGGACTACTATGTTGAACCAGCTGATGAAAGGAGGCCTTTCEST: gi|58604817|gb|CK015345.1|CK015345
genomic: GTGTGCTCAAGCTCCGTGGTTTGGACCAGGAGTACGAGGGCAATATTGAGgtacaaatac ... ctttggttagGCCACTGGGGAGGACTACTATGTTGAACCAGCTGATGAAAGGCGGCCTTTC
EST: GTGTGCTCAAGCTCCGTGGTTTGGACCAGGAGTACGAGGGCAATATTGAG GCCACTGGGGAGGACTACTATGTTGAACCAGCTGATGAEST: gi|218492462|gb|FG964263.1|FG964263
genomic: GTGTGCTCAAGCTCCGTGGTTTGGACCAGGAGTACGAGGGCAATATTGAGgtacaaatac ... ctttggttagGCCACTGGGGAGGACTACTATGTTGAACCAGCTGATGA
EST: GTGTGCTCAAGCTCCGTGGTTTGGACCAGGAGTACGAGGGCAATATTGAG GCCACTGGGGAGGACTACTATGTTGAACCAGCTGATGAAAGGCGGCCTTTCEST: gi|44667460|gb|CR280894.1|CR280894
genomic: GTGTGCTCAAGCTCCGTGGTTTGGACCAGGAGTACGAGGGCAATATTGAGgtacaaatac ... ctttggttagGCCACTGGGGAGGACTACTATGTTGAACCAGCTGATGAAAGGCGGCCTTTC
EST: GTGTGCCCAAGCTCCGTGGTTTGGACCAGGAGTACGAGGGCAATATTGAG GCCACTGGGGAGGACTACTATGTTGAACCAGCTGATGAAAGGCGGCCTTTCEST: gi|33799084|gb|CF325402.1|CF325402
genomic: GTGTGCTCAAGCTCCGTGGTTTGGACCAGGAGTACGAGGGCAATATTGAGgtacaaatac ... ctttggttagGCCACTGGGGAGGACTACTATGTTGAACCAGCTGATGAAAGGCGGCCTTTC
EST: GTGTGCTCAAGCTCCGTGGTTTGGACCAGGAGTACGAGGGCAATATTGAG GCCACTGGGGAGGACTACTATGTTGAACCAGCTGATGAAAGGCGGCCTTTCEST: gi|33654169|gb|CF276783.1|CF276783
genomic: GTGTGCTCAAGCTCCGTGGTTTGGACCAGGAGTACGAGGGCAATATTGAGgtacaaatac ... ctttggttagGCCACTGGGGAGGACTACTATGTTGAACCAGCTGATGAAAGGCGGCCTTTC
EST: TGTGCTCAAGCTCCGTGGGTTTGGACCAGGAGTACGAGGGCAATATTGAG GCCACTGGGGAGGACTACTATGTTGAACCAGCTGATGAAAGGEST: gi|29657555|gb|CB653830.1|CB653830
genomic: TGTGCTCAAGCTCCGTGG-TTTGGACCAGGAGTACGAGGGCAATATTGAGgtacaaatac ... ctttggttagGCCACTGGGGAGGACTACTATGTTGAACCAGCTGATGAAAGG
EST: GTGTGCTCAAGCTCCGTGGTTTGGACCAGGAGTACGAGGGCAATATTGAG GCCACTGGGGAGGACTACTATGTTGAACCAGCTGATGAAAGGCGGCCTTTCEST: gi|3768108|gb|AU032135.1|AU032135
genomic: GTGTGCTCAAGCTCCGTGGTTTGGACCAGGAGTACGAGGGCAATATTGAGgtacaaatac ... ctttggttagGCCACTGGGGAGGACTACTATGTTGAACCAGCTGATGAAAGGCGGCCTTTC
EST: TACGA-GGCAATATTGAG CCCACTGGGGAGGACTNNCTATGTTGAACCAGCTGATGAAA-GCGGCTTTTEST: gi|33693282|gb|CF321521.1|CF321521
genomic: TACGAGGGCAATATTGAGgtacaaatac ... ctttggttagGCCACTGGGGAGGACT-ACTATGTTGAACCAGCTGATGAAAGGCGGCCTTT
EST: GTGTGCTCAAGCTCCGTGGTTTGGACCAGGAGTACGAGGGCAATATTGAG GCCACTGGGGAGGACTACTATGTTGAACCAGCTGATGAAAGGCGGCCTTTCEST: gi|58596831|gb|CK007359.1|CK007359
genomic: GTGTGCTCAAGCTCCGTGGTTTGGACCAGGAGTACGAGGGCAATATTGAGgtacaaatac ... ctttggttagGCCACTGGGGAGGACTACTATGTTGAACCAGCTGATGAAAGGCGGCCTTTC
EST: GTGTGCTCAAGCTCCGTGG-TTGGACCAGGAGTACGAGGGCAATATTGAG GCCACTGGGGAGGACTACTATGTTGAACCAGCTGATGAAAGGCGGGCTTTCEST: gi|58686254|gb|CK074941.1|CK074941
genomic: GTGTGCTCAAGCTCCGTGGTTTGGACCAGGAGTACGAGGGCAATATTGAGgtacaaatac ... ctttggttagGCCACTGGGGAGGACTACTATGTTGAACCAGCTGATGAAAGGCGGCCTTTC
EST: GTGTGCTCAAGCTCCGTGGTTTGGACCAGGAGTACGAGGGCAATATTGAG GCCACTGGGGAGGACTACTATGTTGAACCAGCTGATGAAAGGCGGCCTTTCEST: gi|29687293|gb|CB683568.1|CB683568
genomic: GTGTGCTCAAGCTCCGTGGTTTGGACCAGGAGTACGAGGGCAATATTGAGgtacaaatac ... ctttggttagGCCACTGGGGAGGACTACTATGTTGAACCAGCTGATGAAAGGCGGCCTTTC
EST: GTGTGCTCAAGCTCCGTGGTTTGGACCATGAGTACGAGGGCAATATTGAG GCCACTGGGGAGGACTACTATGTTGAACCACCTGATGAAAGGCGGCCTTTCEST: gi|33664208|gb|CF295175.1|CF295175
genomic: GTGTGCTCAAGCTCCGTGGTTTGGACCAGGAGTACGAGGGCAATATTGAGgtacaaatac ... ctttggttagGCCACTGGGGAGGACTACTATGTTGAACCAGCTGATGAAAGGCGGCCTTTC
EST: TGTGCTCAA-CTNCCGTGGTTTGGACCAGGAGTACGAGGGCAATATTGAG GCCACTGGGGAGGACTACTATGTTGAACCAGCTGATGAAAGGEST: gi|32948464|gb|BP185036.1|BP185036
genomic: TGTGCTCAAGCT-CCGTGGTTTGGACCAGGAGTACGAGGGCAATATTGAGgtacaaatac ... ctttggttagGCCACTGGGGAGGACTACTATGTTGAACCAGCTGATGAAAGG
EST: GTGTGCTCAAGCTCCGTGGTTTGGACCAGGAGTACGAGGGCAATATTGAG GCCACTGGGGAGGACTACTATGTTGAACCAGCTGATGAAAGGCGGCCTTTCEST: gi|33690075|gb|CF318314.1|CF318314
genomic: GTGTGCTCAAGCTCCGTGGTTTGGACCAGGAGTACGAGGGCAATATTGAGgtacaaatac ... ctttggttagGCCACTGGGGAGGACTACTATGTTGAACCAGCTGATGAAAGGCGGCCTTTC
EST: GTGCTCAAGCTTCCGGTGGTTTGGACCAGGAGTACGAGGGCAATATTGAG GCCACTGGGGGAGGACTACTATGTTGAACCAGCTGATGAAAGGEST: gi|9884543|gb|BE607376.1|BE607376
genomic: GTGCTCAAGCT-CCG-TGGTTTGGACCAGGAGTACGAGGGCAATATTGAGgtacaaatac ... ctttggttagGCCACTGGGG-AGGACTACTATGTTGAACCAGCTGATGAAAGG
EST: GTGTGCTCACGCTCCGTGGTTTGGACCANGAGTACGAGGGCAATGTTGAG GCCACTGGGGAGGACTACTATGTTGAACCAGCTGATGAAAGGAGGCCTTTCEST: gi|32948110|gb|BP184682.1|BP184682
genomic: GTGTGCTCAAGCTCCGTGGTTTGGACCAGGAGTACGAGGGCAATATTGAGgtacaaatac ... ctttggttagGCCACTGGGGAGGACTACTATGTTGAACCAGCTGATGAAAGGCGGCCTTTC
EST: GTGTGCTCAAGCTCCGTGGTTTGGACCAGGAGTACGAGGGCAATATTGAG GCCACTGGGGAGGACTACTATGTTGAACCAGCTGATGAAAGGCGGCCTTTCEST: gi|117251436|gb|CT844165.1|CT844165
genomic: GTGTGCTCAAGCTCCGTGGTTTGGACCAGGAGTACGAGGGCAATATTGAGgtacaaatac ... ctttggttagGCCACTGGGGAGGACTACTATGTTGAACCAGCTGATGAAAGGCGGCCTTTC
EST: GTGTGCTCAAGCTCCGTGGTTTGGACCAGGAGTACGAGGGCAATATTGAG GCCACTGGGGAGGACTACTATGTTGAACCAGCTGATGAAAGGCGGCCTTTCEST: gi|33688829|gb|CF317068.1|CF317068
genomic: GTGTGCTCAAGCTCCGTGGTTTGGACCAGGAGTACGAGGGCAATATTGAGgtacaaatac ... ctttggttagGCCACTGGGGAGGACTACTATGTTGAACCAGCTGATGAAAGGCGGCCTTTC
EST: GTGTGCTCAA-CTCCGTGGTTTGGACCAGGAGTACGAGGGCAATATTGAG GCCACTGGGGAGGACTACTATGTTGAACCAGCTGATGAAAGGCGGCCTTTCEST: gi|58602021|gb|CK012549.1|CK012549
genomic: GTGTGCTCAAGCTCCGTGGTTTGGACCAGGAGTACGAGGGCAATATTGAGgtacaaatac ... ctttggttagGCCACTGGGGAGGACTACTATGTTGAACCAGCTGATGAAAGGCGGCCTTTC
EST: GTGTGCTCAAGCTCCGTGGTTTGGACCAGGAGTACGAGGGCAATATTGAG GCCACTGGGGAGGACTACTATGTTGAACCAGCTGATGAAAGGCGGCCTTTCEST: gi|58599223|gb|CK009751.1|CK009751
genomic: GTGTGCTCAAGCTCCGTGGTTTGGACCAGGAGTACGAGGGCAATATTGAGgtacaaatac ... ctttggttagGCCACTGGGGAGGACTACTATGTTGAACCAGCTGATGAAAGGCGGCCTTTC
EST: GTGTGCTCAAGCTCCGTGGTTTGGACCAGGAGTACGAGGGCAATATTGAG GCCACTGGGGAGGACTACTATEST: gi|33823697|gb|CF337654.1|CF337654
genomic: GTGTGCTCAAGCTCCGTGGTTTGGACCAGGAGTACGAGGGCAATATTGAGgtacaaatac ... ctttggttagGCCACTGGGGAGGACTACTAT
EST: GTGTGCTCAAGCTCCGTGGTTTGGACCAGGAGTACGAGGGCAATATTGAG GCCACTGGGGAGGACTACTATGTTGAACCAGCTGATGAAAGGCGGCCTTTCEST: gi|33690461|gb|CF318700.1|CF318700
genomic: GTGTGCTCAAGCTCCGTGGTTTGGACCAGGAGTACGAGGGCAATATTGAGgtacaaatac ... ctttggttagGCCACTGGGGAGGACTACTATGTTGAACCAGCTGATGAAAGGCGGCCTTTC
EST: TGTGCTCAA-CTCCGTGGGTTTGGACCAGGAGTACGAGGGCAATATTGAG GCCACTGGGGAGGACTACTATGTTGAACCAGCTGATGAAAGGEST: gi|163917751|gb|EG711285.1|EG711285
genomic: TGTGCTCAAGCTCCGTGG-TTTGGACCAGGAGTACGAGGGCAATATTGAGgtacaaatac ... ctttggttagGCCACTGGGGAGGACTACTATGTTGAACCAGCTGATGAAAGG
EST: GTGTGCTCAAGCTCCGTGGTTTGGACCAGGAGTACGAGGGCAATATTGAG GCCACTGGGGAGGACTACTATGTTGAACCAGCTGATGAAAGGCGGCEST: gi|88385545|gb|CI564205.1|CI564205
genomic: GTGTGCTCAAGCTCCGTGGTTTGGACCAGGAGTACGAGGGCAATATTGAGgtacaaatac ... ctttggttagGCCACTGGGGAGGACTACTATGTTGAACCAGCTGATGAAAGGCGGC
EST: GTGTGCTCAAGCTCCGTGGTTTGGACCAGGAGTACGAGGGCAATATTGAG GCCACTGGGGAGGACTACTATGTTGAACCAGCTGATGAAAGGCGGCCTTTCEST: gi|58683059|gb|CK071746.1|CK071746
genomic: GTGTGCTCAAGCTCCGTGGTTTGGACCAGGAGTACGAGGGCAATATTGAGgtacaaatac ... ctttggttagGCCACTGGGGAGGACTACTATGTTGAACCAGCTGATGAAAGGCGGCCTTTC
EST: GTGTGCTCAAGCTCCGTGG-TTGGACCAGGAGTACGAGGGCAATATTGAG GCCACTGGGGAGGACTACTATGTTGAACCAGCTGATGAAAGGCGGCCTTTCEST: gi|58591763|gb|CF990071.1|CF990071
genomic: GTGTGCTCAAGCTCCGTGGTTTGGACCAGGAGTACGAGGGCAATATTGAGgtacaaatac ... ctttggttagGCCACTGGGGAGGACTACTATGTTGAACCAGCTGATGAAAGGCGGCCTTTC
EST: GTGTGCTCAAGCTCCGTGGTTTGGACCAGGAGTACGAGGGCAATATTGAG GCCACTGGGGAGGACTACTATGTTGAACCAGCTGATGAAAGGCGEST: gi|58593862|gb|CF992170.1|CF992170
genomic: GTGTGCTCAAGCTCCGTGGTTTGGACCAGGAGTACGAGGGCAATATTGAGgtacaaatac ... ctttggttagGCCACTGGGGAGGACTACTATGTTGAACCAGCTGATGAAAGGCG
EST: GTGTGCTCAAGCTCCGTGGTTTGGACCAGGAGTACGAGGGCAATATTGAG GCCACTGGGGAGGACTACTATGTTGAACCAGCTGATGAAAGGCGGCCTTTCEST: gi|12405044|gb|AU166645.1|AU166645
genomic: GTGTGCTCAAGCTCCGTGGTTTGGACCAGGAGTACGAGGGCAATATTGAGgtacaaatac ... ctttggttagGCCACTGGGGAGGACTACTATGTTGAACCAGCTGATGAAAGGCGGCCTTTC
EST: GTGTGCTCACGCTCCGTGGTTTGGACCAGGAGTACGAGGGCAATGTTGAG GCCACTGGGGAGGACTACTATGTTGAACCAGCTGATGAAAGGAGGCCTTTCEST: gi|38568588|gb|CD670803.1|CD670803
genomic: GTGTGCTCAAGCTCCGTGGTTTGGACCAGGAGTACGAGGGCAATATTGAGgtacaaatac ... ctttggttagGCCACTGGGGAGGACTACTATGTTGAACCAGCTGATGAAAGGCGGCCTTTC
EST: GTGTGCTCACGCTCCGTGGTTTGGACCAGGAGTACGAGGGCAATGTTGAG GCCACTGGGGAGGACTACTATGTTGAACCAGCTGATGAAAGGAGGCCTTTCEST: gi|33664336|gb|CF295303.1|CF295303
genomic: GTGTGCTCAAGCTCCGTGGTTTGGACCAGGAGTACGAGGGCAATATTGAGgtacaaatac ... ctttggttagGCCACTGGGGAGGACTACTATGTTGAACCAGCTGATGAAAGGCGGCCTTTC
EST: GTGTGCTCAAGCTCCGTGGTTTGGACCAGGAGTACGAGGGCAATATTGAG GCCACTGNGGAGGACTACTATGTTGAACCAGCTGATGAAAGGCGGCCTTTCEST: gi|29657556|gb|CB653831.1|CB653831
genomic: GTGTGCTCAAGCTCCGTGGTTTGGACCAGGAGTACGAGGGCAATATTGAGgtacaaatac ... ctttggttagGCCACTGGGGAGGACTACTATGTTGAACCAGCTGATGAAAGGCGGCCTTTC
EST: AGGAGTACGAGGGCAATATTGAG GCCACTGGGGAGGACTACTATGTTGAACCAGCTGATGAAAGGCGGCCTTTCEST: gi|33693846|gb|CF322085.1|CF322085
genomic: AGGAGTACGAGGGCAATATTGAGgtacaaatac ... ctttggttagGCCACTGGGGAGGACTACTATGTTGAACCAGCTGATGAAAGGCGGCCTTTC
EST: GTGTGCTCAAGCTCCGTGGTTTGGACCAGGAGTACGAGGGCAATATTGAG GCCACTGGGGAGGACTACTATGTTGAACC
genomic: GTGTGCTCAAGCTCCGTGGTTTGGACCAGGAGTACGAGGGCAATATTGAGgtacaaatac ... ctttggttagGCCACTGGGGAGGACTACTATGTTGAACC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTATTGCACTGGCTTGCTTTTGGCTCGCCGTGTGCTCAAGCTCCGTGGTTTGGACCAGGAGTACGAGGGCAATATTGAGgtacaaatacaatccttataaattttttactctatatgctcatgctcatgctgattttgatcttgatatgtatgattcctttggttag
- - - - - - - - - - - - - - - - - - CAAGCT