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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTGTAGGCAACTGTGCTATGGAGGAGAAGCAAATTTTCCAAAATGTGCAAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAACgtaagtactccaatattttctttataacacggagtacatgcaacatttatctactccctttgtttcatattataagttgcatttacttcctttacttttt...

Basic information

species Oryza sativa
transcript LOC_Os01g64090.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g64090.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G023748_T02 (Zea mays), 5'ss of exon 5
TGCTGTAGGCAACTGTGCTATGGAGGAGAAGCAAATTTTCCAAAATGTGCAAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAACgtaagtactccaatattttctttataacacggagtacatgc-aacatttatctactccctttgtttcatattataagttgcatttacttcctttacttttt
|||||| |||||||| |  ||||| |||||||| || ||||| |||||||||||||| || |||||||| || || || ||||| |||||||||||||| ||| || |  ||  || |   | | |  |  |  ||  | | || || |  |||  | ||  | |   | | ||    ||  ||| |              
TGCTGTTGGCAACTGCGGCATGGATGAGAAGCAGATCTTCCAGAATGTGCAAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAATgtatgttcctca-catctgtataaaattaatgcttatgttctaaaatatgactatccactgggctaactgtcatcttgtgtgtttgcag------------

upper sequence: LOC_Os01g64090.1 (Oryza sativa), 5'ss of exon 5
lower sequence: AT5G22440.1 (Arabidopsis thaliana), 5'ss of exon 5
TGCTGTAGGCAACTGTGCTATGGAGGAGAAGCAAATTTTCCAAAATGTGCAAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAACgtaagtactccaatattttctttataacacggagtacatgcaacatttatctactccctttgtttcatattataagttgcatttacttcctttacttttt
|||||| || ||   | | |||||||||||||| || || |||||||| || ||||| || |||||||| || ||||| |||||||| || ||||| || || ||||   ||| |   ||||        | | | |  |    || | ||| |   | ||  |   |||   ||     | ||  | | || |||    
TGCTGTCGGTAATCTTTCCATGGAGGAGAAGCAGATCTTTCAAAATGTTCAGATGAGTGTTAACTTCCTCGTTTCTCTCTTGAAGAAAAACTGGCAAAATgttagta--acaacaccctctt--------gaacttctcg----atctttctccatacatttatcagtatctaaaacctgagttgttcctttgactgcag

upper sequence: LOC_Os01g64090.1 (Oryza sativa), 5'ss of exon 5
lower sequence: AT2G27530.1 (Arabidopsis thaliana), 5'ss of exon 5
TGCTGTAGGCAACTGTGCTATGGAGGAGAAGCAAATTTTCCAAAATGTGCAAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAACgtaagtactccaatattttctttataacacggagtacatgcaacatttatctactccctttgtttcatattataagttgcatttacttcctttacttttt
|||||| || |||  | | ||||| ||||||||  | ||||| |||||||| ||||| || |||||||| ||||| || ||||||||||||||||| ||||||  |  | |  | || |   ||| |    |  ||  | |    |  ||||    |   |||   | ||| | | ||| || |   | |          
TGCTGTTGGTAACCTTTCCATGGAAGAGAAGCAGCTCTTCCAGAATGTGCAGATGAGTGTTAACTTCCTCGTCTCGCTCTTGAAGAAGAATTGGCAAAACgta--tgattctgttttgttcctatgattgtgtctaatttctttctaaatctctctctagtgtacta-attttgatttggatcttgatgcag--------

upper sequence: LOC_Os01g64090.1 (Oryza sativa), 5'ss of exon 5
lower sequence: PP1S40_297V6.1 (Physcomitrella patens), 5'ss of exon 3
TGCTGTAGGCAACTGTGCTATGGAGGAGAAGCAAATTTTCCAAAATGTGCAAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAACgtaagtactccaatattttctttataacacggagtacatgcaa---catttatctactccctttgtttca--tattataagttgcatttacttcctttacttttt---------------------------------
 ||  | || ||||||| ||||||||| |||||||| ||||| ||    |||||| | || |||||||| || || || ||||||||||| |||||||| ||||||||     |   ||  |  |   | | |||| ||   |     ||  | |  | | | | |||    |||||   | ||    |||    | ||  ||                                   
CGCCATCGGTAACTGTGATATGGAGGAAAAGCAAATCTTCCAGAACACACAAATGGGTGTTAACTTCCTCGTGTCCCTGTTGAAGAAGAACTGGCAGAATgtaagtacatttgttcctttctatttgaatgcagtatatctgaaggtgttcttgtgatgcttgtattttcattattaagtgatggtcatacaatgtctaagttcagtattttatctaacgtttgaatttttgtaacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86855006|gb|CI263073.1|CI263073
EST:     AAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAAC                         GTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAAGTGATCCGGGTGTTC
genomic: AAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAACgtaagtactc ... atgtatacagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAAGTGATCCGGGTGTTC
EST: gi|88473763|gb|CI411034.1|CI411034
EST:     AAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAAC                         GTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAAGTGATCCGGGTGTTC
genomic: AAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAACgtaagtactc ... atgtatacagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAAGTGATCCGGGTGTTC
EST: gi|86543712|gb|CI183918.1|CI183918
EST:     AAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAAC                         GTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAAGTGATCCGGGTGTTC
genomic: AAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAACgtaagtactc ... atgtatacagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAAGTGATCCGGGTGTTC
EST: gi|27920704|gb|CB096512.1|CB096512
EST:     AAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAAC                         GTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAAGTGATCCGGGTGTTC
genomic: AAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAACgtaagtactc ... atgtatacagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAAGTGATCCGGGTGTTC
EST: gi|88238083|gb|CI237932.1|CI237932
EST:     AAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAAC                         GTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAAGTGATCCGGGTGTTC
genomic: AAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAACgtaagtactc ... atgtatacagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAAGTGATCCGGGTGTTC
EST: gi|88376420|gb|CI535524.1|CI535524
EST:     AAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAAC                         GTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAAGTGATCCGGGTGTTC
genomic: AAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAACgtaagtactc ... atgtatacagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAAGTGATCCGGGTGTTC
EST: gi|86543033|gb|CI183239.1|CI183239
EST:     AAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAAC                         GTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAAGTGATCCGGGTGTTC
genomic: AAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAACgtaagtactc ... atgtatacagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAAGTGATCCGGGTGTTC
EST: gi|87034170|gb|CI188794.1|CI188794
EST:     AAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAAC                         GTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAAGTGATCCGGGTGTTC
genomic: AAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAACgtaagtactc ... atgtatacagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAAGTGATCCGGGTGTTC
EST: gi|88969139|gb|CI382688.1|CI382688
EST:     AAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAAC                         GTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAAGTGATCCGGGTGTTC
genomic: AAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAACgtaagtactc ... atgtatacagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAAGTGATCCGGGTGTTC
EST: gi|86498451|gb|CI141084.1|CI141084
EST:     AAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAAC                         GTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAAGTGATCCGGGTGTTC
genomic: AAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAACgtaagtactc ... atgtatacagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAAGTGATCCGGGTGTTC
EST: gi|86526191|gb|CI166397.1|CI166397
EST:     AAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAAC                         GTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAAGTGATCCGGGTGTTC
genomic: AAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAACgtaagtactc ... atgtatacagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAAGTGATCCGGGTGTTC
EST: gi|86546888|gb|CI187094.1|CI187094
EST:     AAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAAC                         GTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAAGTGATCCGGGTGTTC
genomic: AAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAACgtaagtactc ... atgtatacagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAAGTGATCCGGGTGTTC
EST: gi|86543087|gb|CI183293.1|CI183293
EST:     AAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAAC                         GTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAAGTGATCCGGGTGTTC
genomic: AAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAACgtaagtactc ... atgtatacagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAAGTGATCCGGGTGTTC
EST: gi|88216033|gb|CI215882.1|CI215882
EST:     AAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAAC                         GTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAAGTGATCCGGGTGTTC
genomic: AAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAACgtaagtactc ... atgtatacagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAAGTGATCCGGGTGTTC
EST: gi|87020293|gb|CI261157.1|CI261157
EST:     AAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAAC                         GTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAAGTGATCCGGGTGTTC
genomic: AAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAACgtaagtactc ... atgtatacagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAAGTGATCCGGGTGTTC
EST: gi|88376017|gb|CI530521.1|CI530521
EST:     AAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAAC                         GTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAAGTGATCCGGGTGTTC
genomic: AAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAACgtaagtactc ... atgtatacagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAAGTGATCCGGGTGTTC
EST: gi|86529462|gb|CI169668.1|CI169668
EST:     AAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAAC                         GTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAAGTGATCCGGGTGTTC
genomic: AAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAACgtaagtactc ... atgtatacagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAAGTGATCCGGGTGTTC
EST: gi|88509604|gb|CI437110.1|CI437110
EST:     AAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAAC                         GTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAAGTGATCCGGGTGTTC
genomic: AAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAACgtaagtactc ... atgtatacagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAAGTGATCCGGGTGTTC
EST: gi|88199182|gb|CI199032.1|CI199032
EST:     AAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAAC                         GTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAAGTGATCCGGGTGTTC
genomic: AAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAACgtaagtactc ... atgtatacagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAAGTGATCCGGGTGTTC
EST: gi|33683413|gb|CF311652.1|CF311652
EST:     AAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAAC                         GTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAAGTGATCCGGGTGTTC
genomic: AAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAACgtaagtactc ... atgtatacagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAAGTGATCCGGGTGTTC
EST: gi|88321296|gb|CI533046.1|CI533046
EST:     AAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAAC                         GTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAAGTGATCCGGGTGTTC
genomic: AAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAACgtaagtactc ... atgtatacagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAAGTGATCCGGGTGTTC
EST: gi|88202396|gb|CI201258.1|CI201258
EST:     AAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAAC                         GTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAAGTGATCCGGGTGTTC
genomic: AAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAACgtaagtactc ... atgtatacagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAAGTGATCCGGGTGTTC
EST: gi|88199507|gb|CI199357.1|CI199357
EST:     AAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAAC                         GTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAAGTGATCCGGGTGTTC
genomic: AAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAACgtaagtactc ... atgtatacagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAAGTGATCCGGGTGTTC
EST: gi|86544876|gb|CI185082.1|CI185082
EST:     AAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAAC                         GTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAAGTGATCCGGGTGTTC
genomic: AAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAACgtaagtactc ... atgtatacagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAAGTGATCCGGGTGTTC
EST: gi|88965837|gb|CI006671.1|CI006671
EST:     AAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAAC                         GTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAAGTGATCCGGGTGTTC
genomic: AAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAACgtaagtactc ... atgtatacagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAAGTGATCCGGGTGTTC
EST: gi|86529199|gb|CI169405.1|CI169405
EST:     AAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAAC                         GTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAAGTGATCCGGGTGTTC
genomic: AAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAACgtaagtactc ... atgtatacagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAAGTGATCCGGGTGTTC
EST: gi|88237903|gb|CI237752.1|CI237752
EST:     AAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAAC                         GTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAAGTGATCCGGGTGTTC
genomic: AAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAACgtaagtactc ... atgtatacagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAAGTGATCCGGGTGTTC
EST: gi|86542550|gb|CI182756.1|CI182756
EST:     AAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAAC                         GTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAAGTGATCCGGGTGTTC
genomic: AAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAACgtaagtactc ... atgtatacagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAAGTGATCCGGGTGTTC
EST: gi|87033326|gb|CI187950.1|CI187950
EST:     AAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAAC                         GTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAAGTGATCCGGGTGTTC
genomic: AAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAACgtaagtactc ... atgtatacagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAAGTGATCCGGGTGTTC
EST: gi|55414436|gb|CV726812.1|CV726812
EST:     AAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAAC                         GTGAGATGCTTGTACCTGAAGAGCGCTATGGGAAAAGTGATCCGGGTGTTC
genomic: AAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAACgtaagtactc ... atgtatacagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAAGTGATCCGGGTGTTC
EST: gi|86543029|gb|CI183235.1|CI183235
EST:     AAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAAC                         GTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAAGTGATCCGGGTGTTC
genomic: AAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAACgtaagtactc ... atgtatacagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAAGTGATCCGGGTGTTC
EST: gi|55442048|gb|CV734344.1|CV734344
EST:     AAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAAC                         GTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAAGTGATCCGGGTGTTC
genomic: AAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAACgtaagtactc ... atgtatacagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAAGTGATCCGGGTGTTC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 73 (upstream exon), 70 (downstream exon)
Score: 45

TGCTGTAGGCAACTGTGCTATGGAGGAGAAGCAAATTTTCCAAAATGTGCAAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAACgtaagtactc ... atgtatacagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAAGTGATCCGGGTGTTCTAAATGGTTTTCTTCATGCTCCTCGAATTTCTAGAGACTTCCCTGCTTG




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGCTGTAGGCAACTGTGCTATGGAGGAGAAGCAAATTTTCCAAAATGTGCAAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAACgtaagtactccaatattttctttataacacggagtacatgcaacatttatctactccctttgtttcatattataagttgcatttacttcctttacttttt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG