1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GATTGTTCTGGAAACAGATGCAAAGGCGATTCTTGAAAAGGTATCAGGTCATGGATTGGAAGGATCCGGGTCTCTCACTGAGCAGgtatggcaagccgtcgcatcaccttaagtgcaattgcacaatgagatgcaatcatggtgtcgtaattgccaccaaaccaacatgagaaaattcccaagtgaattaattcttttttgtacatgcag
species | Oryza sativa |
transcript | LOC_Os01g62150.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AAAAGGTATCAGGTCATGGATTGGAAGGATCCGGGTCTCTCACTGAGCAG AAGTTAAGCAGTGCCCTAGCAACGGCAAGAGAACACTTTGCGAGATCTATTEST: gi|33688267|gb|CF316506.1|CF316506
genomic: AAAAGGTATCAGGTCATGGATTGGAAGGATCCGGGTCTCTCACTGAGCAGgtatggcaag ... gtacatgcagAAGTTAAGCAGTGCCCTAGCAACGGCAAGAGAACACTTTGCGAGATCTATT
EST: AAAAGGTATCAGGTCATGGATTGGAAGGATCCGGGTCTCTCACTGAGCAG AAGTTAAGCAGTGCCCTAGCAACGGCAAGAGAACACTTTGCGAGATCTATTEST: gi|88265041|gb|CI368815.1|CI368815
genomic: AAAAGGTATCAGGTCATGGATTGGAAGGATCCGGGTCTCTCACTGAGCAGgtatggcaag ... gtacatgcagAAGTTAAGCAGTGCCCTAGCAACGGCAAGAGAACACTTTGCGAGATCTATT
EST: AAAAGGTATCAGGTCATGGATTGGAAGGATCCGGGTCTCTCACTGAGCAG AAGTTAAGCAGTGCCCTAGCAACGGCAAGAGAACACTTTGCGAGATCTATTEST: gi|86822723|gb|CI251806.1|CI251806
genomic: AAAAGGTATCAGGTCATGGATTGGAAGGATCCGGGTCTCTCACTGAGCAGgtatggcaag ... gtacatgcagAAGTTAAGCAGTGCCCTAGCAACGGCAAGAGAACACTTTGCGAGATCTATT
EST: AAAAGGTATCAGGTCATGGATTGGAAGGATCCGGGTCTCTCACTGAGCAG AAGTTAAGCAGTGCCCTAGCAACGGCAAGAGAACACTTTGCGAGATCTATTEST: gi|25807173|gb|CA763128.1|CA763128
genomic: AAAAGGTATCAGGTCATGGATTGGAAGGATCCGGGTCTCTCACTGAGCAGgtatggcaag ... gtacatgcagAAGTTAAGCAGTGCCCTAGCAACGGCAAGAGAACACTTTGCGAGATCTATT
EST: AAAAGGTATCAGGTCATGGATTGGAAGGATCCGGGTCTCTCACTGAGCAG AAGTTAAGCAGTGCCCTAGCAACGGCAAGAGAACACTTTGCGAGATCTATTEST: gi|86881614|gb|CI322617.1|CI322617
genomic: AAAAGGTATCAGGTCATGGATTGGAAGGATCCGGGTCTCTCACTGAGCAGgtatggcaag ... gtacatgcagAAGTTAAGCAGTGCCCTAGCAACGGCAAGAGAACACTTTGCGAGATCTATT
EST: AAAAGGTATCAGGTCATGGATTGGAAGGATCCGGGTCTCTCACTGAGCAG AAGTTAAGCAGTGCCCTACCAACGGCAAGAGAACACTTTGCGAGATCTATTEST: gi|88376520|gb|CI535624.1|CI535624
genomic: AAAAGGTATCAGGTCATGGATTGGAAGGATCCGGGTCTCTCACTGAGCAGgtatggcaag ... gtacatgcagAAGTTAAGCAGTGCCCTAGCAACGGCAAGAGAACACTTTGCGAGATCTATT
EST: AAAAGGTATCAGGTCATGGATTGGAAGGATCCGGGTCTCTCACTGACCAG AAGTTAAGCAGTGCCCTAGCAACGGCAAGAGAACACTTTGCGAGATCTATTEST: gi|88906096|gb|CI375168.1|CI375168
genomic: AAAAGGTATCAGGTCATGGATTGGAAGGATCCGGGTCTCTCACTGAGCAGgtatggcaag ... gtacatgcagAAGTTAAGCAGTGCCCTAGCAACGGCAAGAGAACACTTTGCGAGATCTATT
EST: AAAAGGTATCAGGTCATGGATTGGAAGGATCCGGGTCTCTCACTGAGCAG AAGTTAAGCAGTGCCCTAGCAACGGCAAGAGAACACTTTGCGAGATCTATTEST: gi|88720647|gb|CI743946.1|CI743946
genomic: AAAAGGTATCAGGTCATGGATTGGAAGGATCCGGGTCTCTCACTGAGCAGgtatggcaag ... gtacatgcagAAGTTAAGCAGTGCCCTAGCAACGGCAAGAGAACACTTTGCGAGATCTATT
EST: AAAAGGTATCAGGTCATGGATTGGAAGGATCCGGGTCTCTCACTGAGCAG AAGTTAAGCAGTGCCCTAGCAACGGCAAGAGAACACTTTGCGAGATCTATTEST: gi|86502736|gb|CI145369.1|CI145369
genomic: AAAAGGTATCAGGTCATGGATTGGAAGGATCCGGGTCTCTCACTGAGCAGgtatggcaag ... gtacatgcagAAGTTAAGCAGTGCCCTAGCAACGGCAAGAGAACACTTTGCGAGATCTATT
EST: AAAAGGTATCAGGTCATGGATTGGAAGGATCCGGGTCTCTCACTGAGCAG AAGTTAAGCAGTGCCCTAGCAACGGCAAGAGAACACTTTGCGAGATCTATTEST: gi|86599370|gb|CI251328.1|CI251328
genomic: AAAAGGTATCAGGTCATGGATTGGAAGGATCCGGGTCTCTCACTGAGCAGgtatggcaag ... gtacatgcagAAGTTAAGCAGTGCCCTAGCAACGGCAAGAGAACACTTTGCGAGATCTATT
EST: AAAAGGTATCAGGTCATGGATTGGAAGGATCCGGGTCTCTCACTGAGCAG AAGTTAAGCAGTGCCCTAGCAACGGCAAGAGAACACTTTGCGAGATCTATTEST: gi|33656564|gb|CF279178.1|CF279178
genomic: AAAAGGTATCAGGTCATGGATTGGAAGGATCCGGGTCTCTCACTGAGCAGgtatggcaag ... gtacatgcagAAGTTAAGCAGTGCCCTAGCAACGGCAAGAGAACACTTTGCGAGATCTATT
EST: AAAAGGTATCAGGTCATGGATTGGAAGGATCCGGGTCTCTCACTGAGCAG AAGTTAAGCAGTGCCCTAGCAACGGCAAGAGAACACTTTGCGAGATCTATT
genomic: AAAAGGTATCAGGTCATGGATTGGAAGGATCCGGGTCTCTCACTGAGCAGgtatggcaag ... gtacatgcagAAGTTAAGCAGTGCCCTAGCAACGGCAAGAGAACACTTTGCGAGATCTATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATTGTTCTGGAAACAGATGCAAAGGCGATTCTTGAAAAGGTATCAGGTCATGGATTGGAAGGATCCGGGTCTCTCACTGAGCAGgtatggcaagccgtcgcatcaccttaagtgcaattgcacaatgagatgcaatcatggtgtcgtaattgccaccaaaccaacatgagaaaattcccaagtgaattaattcttttttgtacatgcag
- - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG