1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TGATAACGATGGCATTGTATCTTATGAAGAATTAAAGAGCGGGATAGCAAAATTTGGTTCTCATCTGGCAGAATCGGAAGTGCAGATGCTTATCGAAGCTgtaagtgttttcagatattcagccacaaatttgtggattttcaaagtcactgatctgtgcatccttcatttagtaggccatgatataggcccctctgata...
species | Oryza sativa |
transcript | LOC_Os01g61590.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AATTTGGTTCTCATCTGGCAGAATCGGAAGTGCAGATGCTTATCGAAGCT GTGGATACAAATGGTAAGGATGCTCTAGATTATGGTGAATTTTTGGCTGTCEST: gi|25806968|gb|CA762929.1|CA762929
genomic: AATTTGGTTCTCATCTGGCAGAATCGGAAGTGCAGATGCTTATCGAAGCTgtaagtgttt ... ttgcaaatagGTGGATACAAATGGTAAGGATGCTCTAGATTATGGTGAATTTTTGGCTGTC
EST: AGAATCGGAAGTGCAGATGCTTATCGAAGCT GTGGATACAAATGGTAAGGGTGCTCTAGATTATGGTGAATTTTTGGCTGTCEST: gi|27547979|gb|CA766009.2|CA766009
genomic: AGAATCGGAAGTGCAGATGCTTATCGAAGCTgtaagtgttt ... ttgcaaatagGTGGATACAAATGGTAAGGATGCTCTAGATTATGGTGAATTTTTGGCTGTC
EST: AATTTGGTTCTCATCTGGCAGAATCGGAAGTGCAGATGCTTATCGAAGCT GTGGATACAAATGGTAAGGGTGCTCTAGATTATGGTGAATTTTTGGCTGTC
genomic: AATTTGGTTCTCATCTGGCAGAATCGGAAGTGCAGATGCTTATCGAAGCTgtaagtgttt ... ttgcaaatagGTGGATACAAATGGTAAGGATGCTCTAGATTATGGTGAATTTTTGGCTGTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGATAACGATGGCATTGTATCTTATGAAGAATTAAAGAGCGGGATAGCAAAATTTGGTTCTCATCTGGCAGAATCGGAAGTGCAGATGCTTATCGAAGCTgtaagtgttttcagatattcagccacaaatttgtggattttcaaagtcactgatctgtgcatccttcatttagtaggccatgatataggcccctctgata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcccctc