1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TGCTGATGAGATTAGAAGAACATATCGGCAAGGCCGCATCACCCCAAAGATTATCGAGCGTATCCAAAATGAAAAATTCCATGAATGGTTCAGAGCTCATgtaagtttcgtgttattatcatttagatcaacaaataaaatcatgactaagtaatcctatgtacacag
species | Oryza sativa |
transcript | LOC_Os01g56270.2 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TTATCGAGCGTATCCAAAATGAAAAATTCCATGAATGGTTCAGAGCTCAT ATAATGGATCTAGAGAGGAAAAATGGCATATGCAGTGTCAAGAATGATCATEST: gi|66916994|gb|CX103842.1|CX103842
genomic: TTATCGAGCGTATCCAAAATGAAAAATTCCATGAATGGTTCAGAGCTCATgtaagtttcg ... atgtacacagATAATGGATCTAGAGAGGAAAAATGGCATATGCAGTGTCAAGAATGATCAT
EST: TTATCGAGCGTATCCAAAATGATTAATTCCATGAATGGTTCAGAGCTCAT ATGATGGATCTAGAGAGGAAAAATGGCATATGCAGTGTCAAGAATGATCATEST: gi|218481613|gb|FG959429.1|FG959429
genomic: TTATCGAGCGTATCCAAAATGAAAAATTCCATGAATGGTTCAGAGCTCATgtaagtttcg ... atgtacacagATAATGGATCTAGAGAGGAAAAATGGCATATGCAGTGTCAAGAATGATCAT
EST: GAAAAATTCCATGAATGGTTCAGAGCTCAT ATAATGGATCTAGAGAGGAAAAATGGCATATGCAGTGTCAAGAATGATCATEST: gi|58687245|gb|CK075932.1|CK075932
genomic: GAAAAATTCCATGAATGGTTCAGAGCTCATgtaagtttcg ... atgtacacagATAATGGATCTAGAGAGGAAAAATGGCATATGCAGTGTCAAGAATGATCAT
EST: GAAAAATTCCATGAATGGTTCAGAGCTCAT ATAATGGATCTAGAGAGGAAAAATGGCATATGCAGTGTCAAGAATGATCAT
genomic: GAAAAATTCCATGAATGGTTCAGAGCTCATgtaagtttcg ... atgtacacagATAATGGATCTAGAGAGGAAAAATGGCATATGCAGTGTCAAGAATGATCAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCTGATGAGATTAGAAGAACATATCGGCAAGGCCGCATCACCCCAAAGATTATCGAGCGTATCCAAAATGAAAAATTCCATGAATGGTTCAGAGCTCATgtaagtttcgtgttattatcatttagatcaacaaataaaatcatgactaagtaatcctatgtacacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA