1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GCGCTCTCCAAAAGAATTCACTATGGTAAGTTTGTGGCAGAGGCTAAGTTTCAAGAGTCTCCTGAAGCTTACATGCCTGCGATAATAGCACAGgtttgtgttctgttttgctgtataatctgtctttatcatgggaagcaaataaattccatgtgttttcttgtacattactttaggtacatatcaaagttgagtctattatgcaagcggctaattatttttatctgggaatttcag
species | Oryza sativa |
transcript | LOC_Os01g55870.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CTAAGTTTCAAGAGTCTCCTGAAGCTTACATGCCTGCGATAATAGCACAG GACTGCGATCAACTAATGCACCTCCTEST: gi|88516750|gb|CI442406.1|CI442406
genomic: CTAAGTTTCAAGAGTCTCCTGAAGCTTACATGCCTGCGATAATAGCACAGgtttgtgttc ... ggaatttcagGACTGCGATCAACTAATGCACCTCCT
EST: AGAGTCTCCTGAAGCTTACATGCCTGCGATAATAGCACAG GACTGCGATCAACTAATGCACCTCCTCACCTATGAAACGGTGGAGCGTGCTEST: gi|29614869|gb|CB619882.1|CB619882
genomic: AGAGTCTCCTGAAGCTTACATGCCTGCGATAATAGCACAGgtttgtgttc ... ggaatttcagGACTGCGATCAACTAATGCACCTCCTCACCTATGAAACGGTGGAGCGTGCT
EST: CTAAGTTTCAAGAGTCTCCTGAAGCTTACATGCCTGCGATAATAGCACAG GACTGCGATCAACTAATGCACCTCCTCACCTATGAAACGGTGGAGCGTGCTEST: gi|88334481|gb|CI676255.1|CI676255
genomic: CTAAGTTTCAAGAGTCTCCTGAAGCTTACATGCCTGCGATAATAGCACAGgtttgtgttc ... ggaatttcagGACTGCGATCAACTAATGCACCTCCTCACCTATGAAACGGTGGAGCGTGCT
EST: CTAAGTTTCAAGAGTCTCCTGAAGCTTACATGCCTGCGATAATAGCACAG GACTGCGATCAACTAATGCACCTCCTCACCTATGAAACGGTGGAGEST: gi|11442834|gb|BF430733.1|BF430733
genomic: CTAAGTTTCAAGAGTCTCCTGAAGCTTACATGCCTGCGATAATAGCACAGgtttgtgttc ... ggaatttcagGACTGCGATCAACTAATGCACCTCCTCACCTATGAAACGGTGGAG
EST: CTAAGTTTCAAGAGTCTCCTGAAGCTTACATGCCTGCGATAATAGCACAG GACTGCGATCAACTAATGCACCTCCTCACCTATGAAACGGTGGAGCGTGCTEST: gi|29617584|gb|CB622596.1|CB622596
genomic: CTAAGTTTCAAGAGTCTCCTGAAGCTTACATGCCTGCGATAATAGCACAGgtttgtgttc ... ggaatttcagGACTGCGATCAACTAATGCACCTCCTCACCTATGAAACGGTGGAGCGTGCT
EST: CTAAGTTTCAAGAGTCTCCTGAAGCTTACATGCCTGCGATAATAGCACAG GACTGCGATCAACTAATGCACCTCCTCACCTATGAAACGGTGGAGCGTGCT
genomic: CTAAGTTTCAAGAGTCTCCTGAAGCTTACATGCCTGCGATAATAGCACAGgtttgtgttc ... ggaatttcagGACTGCGATCAACTAATGCACCTCCTCACCTATGAAACGGTGGAGCGTGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCGCTCTCCAAAAGAATTCACTATGGTAAGTTTGTGGCAGAGGCTAAGTTTCAAGAGTCTCCTGAAGCTTACATGCCTGCGATAATAGCACAGgtttgtgttctgttttgctgtataatctgtctttatcatgggaagcaaataaattccatgtgttttcttgtacattactttaggtacatatcaaagttgagtctattatgcaagcggctaattatttttatctgggaatttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC