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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCTGCCATTCAAGAGAATAGGGTGGCTACAGTTCAGTGCTTGTCAGGAACTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAAgtaaggaatctgccttggctccttcatagatactgatatggttctacattacaatgcaaagtatgatcgctaaattataaacgtgttctccag

Basic information

species Oryza sativa
transcript LOC_Os01g55540.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g55540.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G094712_T02 (Zea mays), 5'ss of exon 5
TCCTGCCATTCAAGAGAATAGGGTGGCTACAGTTCAGTGCTTGTCAGGAACTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAAgtaaggaatctgccttggctccttcatagatactgatatggttctacattacaatgcaaagtatgatcgctaaattataaacgtgttctccag
 ||||| ||||| ||||||||||| ||||| || |||||| | || || |||||||||||||| || ||||||||||||||||||||||| ||||| || || |  ||  |  |||| |||||  ||   |  ||   || |||   |||| |||||     ||||  ||||||| ||| |  | |  |||||
CCCTGCTATTCAGGAGAATAGGGTTGCTACCGTGCAGTGCCTATCGGGTACTGGTTCTTTAAGAGTCGGAGGTGAATTTCTTGCAAGGCACTATCACGAGgtta--aacttttcttg-ctcct--atctgttttgc--tgcttcctgattataatgc-----atgactgctaaatcatacaaatatattccag

upper sequence: LOC_Os01g55540.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GLYMA04G08560.1 (Glycine max), 5'ss of exon 5
TCCTGCCATTCAAGAGAATAGGGTGGCTACAGTTCAGTGCTTGTCAGGAACTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAAgtaaggaa-tctgccttggctccttcatagatactgatatggttctacattacaatgcaaagtatgatcgctaaattataaacgtgttctccag---------------
 ||||| |||||||| || |||||  | || ||||| |||||||| ||||||||||| ||||| || || ||||||||| | || |  || |||||  |||||| |   | || | | | |  ||      | || ||     | |  |     |||  || | ||||      |   |||   | || | | |               
CCCTGCTATTCAAGACAACAGGGTTACCACTGTTCAATGCTTGTCTGGAACTGGTTCATTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAAgtaaagtgctttgtccttgatatttttctccttcttatcctcctttttaac-tgatgttaatt-tgatgatcccaccttaacatttttttactgcacttgtctgctcag

upper sequence: LOC_Os01g55540.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GLYMA06G08670.1 (Glycine max), 5'ss of exon 5
TCCTGCCATTCAAGAGAATAGGGTGGCTACAGTTCAGTGCTTGTCAGGAACTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAAgtaaggaatctg--ccttggctccttcatagatactgata--tggttctacattacaatgcaaagtatgatcgctaaattataaacgtgttc-tccag
 ||||| |||||||| || |||||  | || ||||| |||||||| ||||||||||||||||| || || ||||||||| | || |  || |||||  |||||| |    |   ||||| ||  ||  |      |  ||   | |  ||  |||     |  |   | | |  |   |  |  || |||   | |||
CCCTGCTATTCAAGACAACAGGGTTACCACTGTTCAATGCTTGTCTGGAACTGGTTCTTTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAAgtaaagtgctttgtccttgacttttttgtcctcctttttaaccgatgttaatttaatgatcccaccttaa-cattttttactgcacttgtcaattcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58669037|gb|CK057723.1|CK057723
EST:     CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTTCAAGGCATTATCATGAA                         CGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTC
genomic: CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAAgtaaggaatc ... tgttctccagCGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTC
EST: gi|29660055|gb|CB656330.1|CB656330
EST:     CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAA                         CGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTC
genomic: CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAAgtaaggaatc ... tgttctccagCGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTC
EST: gi|58606260|gb|CK034293.1|CK034293
EST:     CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAA                         CGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGT-TTC
genomic: CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAAgtaaggaatc ... tgttctccagCGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTC
EST: gi|29679665|gb|CB675940.1|CB675940
EST:     CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAA                         CGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTC
genomic: CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAAgtaaggaatc ... tgttctccagCGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTC
EST: gi|218483847|gb|FG951547.1|FG951547
EST:     CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAA                         CGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTC
genomic: CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAAgtaaggaatc ... tgttctccagCGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTC
EST: gi|33678230|gb|CF306469.1|CF306469
EST:     CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAA                         CGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTC
genomic: CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAAgtaaggaatc ... tgttctccagCGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTC
EST: gi|33795088|gb|CF323417.1|CF323417
EST:     TGGTTCTTTAAGGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAA                         CGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTC
genomic: TGGTTCTTTAAGGG-TGGGAGGTGAATTTCTTGCAAGGCATTATCATGAAgtaaggaatc ... tgttctccagCGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTC
EST: gi|425867|gb|D22545.1|D22545
EST:     CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAA                         CGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTC
genomic: CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAAgtaaggaatc ... tgttctccagCGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTC
EST: gi|58694708|gb|CK083395.1|CK083395
EST:     CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAA                         CGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTC
genomic: CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAAgtaaggaatc ... tgttctccagCGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTC
EST: gi|32948296|gb|BP184868.1|BP184868
EST:     CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAA                         CGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTC
genomic: CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAAgtaaggaatc ... tgttctccagCGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTC
EST: gi|44667509|gb|CR280943.1|CR280943
EST:     CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAA                         CGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTC
genomic: CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAAgtaaggaatc ... tgttctccagCGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTC
EST: gi|58656014|gb|CK044694.1|CK044694
EST:     CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAA                         CGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTC
genomic: CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAAgtaaggaatc ... tgttctccagCGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTC
EST: gi|29639571|gb|CB644580.1|CB644580
EST:     CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAA                         CGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTC
genomic: CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAAgtaaggaatc ... tgttctccagCGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTC
EST: gi|88358129|gb|CI605054.1|CI605054
EST:     CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAA                         CGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTC
genomic: CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAAgtaaggaatc ... tgttctccagCGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTC
EST: gi|33795132|gb|CF323439.1|CF323439
EST:     GGTTCTTTAAGGGGTGGGAGGGTGAATTTCTTGCAAGGCATTATCATGAA                         CGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTC
genomic: GGTTCTTTAAGGG-TGGGAGG-TGAATTTCTTGCAAGGCATTATCATGAAgtaaggaatc ... tgttctccagCGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTC
EST: gi|27576897|gb|CA999591.1|CA999591
EST:     CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAA                         CGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTC
genomic: CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAAgtaaggaatc ... tgttctccagCGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTC
EST: gi|2310287|gb|C26442.1|C26442
EST:     TGGTTCTTTAAGGGTTGGGAGGTGAATTTCTTTCAAGGCATTATCATGAA                         CGNACTATATACATCC-ACAGCCAACCT
genomic: TGGTTCTTTAAGGGT-GGGAGGTGAATTTCTTGCAAGGCATTATCATGAAgtaaggaatc ... tgttctccagCGCACTATATACATCCCACAGCCAACCT
EST: gi|218483959|gb|FG947666.1|FG947666
EST:     CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAA                         CGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTC
genomic: CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAAgtaaggaatc ... tgttctccagCGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTC
EST: gi|33793733|gb|CF322749.1|CF322749
EST:     CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAA                         CGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTC
genomic: CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAAgtaaggaatc ... tgttctccagCGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTC
EST: gi|33794958|gb|CF323359.1|CF323359
EST:     TGGTTCTTTAAGGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAA                         CGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTC
genomic: TGGTTCTTTAAGGG-TGGGAGGTGAATTTCTTGCAAGGCATTATCATGAAgtaaggaatc ... tgttctccagCGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTC
EST: gi|218494538|gb|FG968928.1|FG968928
EST:     CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAA                         CGCACTATATACATCCCACAGCCAACCTGAGGGAATCACCCCAAAGTGTTC
genomic: CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAAgtaaggaatc ... tgttctccagCGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTC
EST: gi|32948428|gb|BP185000.1|BP185000
EST:     CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAA                         CGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTC
genomic: CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAAgtaaggaatc ... tgttctccagCGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTC
EST: gi|425866|gb|D22544.1|D22544
EST:     CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAA                         CGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTC
genomic: CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAAgtaaggaatc ... tgttctccagCGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTC
EST: gi|88304127|gb|CI599815.1|CI599815
EST:     CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAA                         CGCACTATATACATCCCACAGCCAAC-TGGGG-AATCACCC-AAAGT-TTC
genomic: CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAAgtaaggaatc ... tgttctccagCGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTC
EST: gi|29658837|gb|CB655112.1|CB655112
EST:     CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAA                         CGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTC
genomic: CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAAgtaaggaatc ... tgttctccagCGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTC
EST: gi|33793380|gb|CF322571.1|CF322571
EST:     CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAA                         CGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTC
genomic: CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAAgtaaggaatc ... tgttctccagCGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTC
EST: gi|163926589|gb|EG713605.1|EG713605
EST:     CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAA                         CGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTC
genomic: CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAAgtaaggaatc ... tgttctccagCGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTC
EST: gi|88719284|gb|CI742794.1|CI742794
EST:     CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAA                         CGCACTATATACATCCCANAGCCAACCCTGGGGGAATCACCCCAAAGTGTT
genomic: CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAAgtaaggaatc ... tgttctccagCGCACTATATACATCCCACAGCCAACC-TGGGGGAATCACCCCAAAGTGTT
EST: gi|2310086|gb|C26241.1|C26241
EST:     CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAA                         CGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTC
genomic: CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAAgtaaggaatc ... tgttctccagCGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTC
EST: gi|33678676|gb|CF306915.1|CF306915
EST:     CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAA                         CGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTC
genomic: CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAAgtaaggaatc ... tgttctccagCGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTC
EST: gi|58675206|gb|CK063893.1|CK063893
EST:     CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAA                         CGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTT
genomic: CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAAgtaaggaatc ... tgttctccagCGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTT
EST: gi|8527391|gb|AU092206.1|AU092206
EST:     CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAA                         CGCACTATATACATCCCACAGCCAACCTGG
genomic: CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAAgtaaggaatc ... tgttctccagCGCACTATATACATCCCACAGCCAACCTGG
EST: gi|33677846|gb|CF306085.1|CF306085
EST:     CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAA                         CGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTC
genomic: CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAAgtaaggaatc ... tgttctccagCGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTC
EST: gi|33680310|gb|CF308549.1|CF308549
EST:     CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAA                         CGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTC
genomic: CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAAgtaaggaatc ... tgttctccagCGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTC
EST: gi|32948311|gb|BP184883.1|BP184883
EST:     CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAA                         CGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTC
genomic: CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAAgtaaggaatc ... tgttctccagCGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTC
EST: gi|33796305|gb|CF324020.1|CF324020
EST:     GGTTCTTTAAGGGTGGGGAGGGTGAATTTCTTGCAAGGCATTATCATGAA                         CGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTC
genomic: GGTTCTTTAAGGGTGGG-AGG-TGAATTTCTTGCAAGGCATTATCATGAAgtaaggaatc ... tgttctccagCGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTC
EST: gi|58672429|gb|CK061115.1|CK061115
EST:     CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAA                         CGCACTATATAC
genomic: CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAAgtaaggaatc ... tgttctccagCGCACTATATAC
EST: gi|218478855|gb|FG949686.1|FG949686
EST:     CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAA                         CGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTC
genomic: CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAAgtaaggaatc ... tgttctccagCGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTC
EST: gi|10794714|gb|AU108680.1|AU108680
EST:     CTGGTTCTTTAAGGGTGGGAGGTGAATTTTTTGCAAGGCATTATCATGAA                         CGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTNTTC
genomic: CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAAgtaaggaatc ... tgttctccagCGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTC
EST: gi|33794428|gb|CF323098.1|CF323098
EST:     CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAA                         CGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTC
genomic: CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAAgtaaggaatc ... tgttctccagCGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTC
EST: gi|33685641|gb|CF313880.1|CF313880
EST:     CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAA                         CGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTC
genomic: CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAAgtaaggaatc ... tgttctccagCGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 69 (downstream exon)
Score: 201

TCCTGCCATTCAAGAGAATAGGGTGGCTACAGTTCAGTGCTTGTCAGGAACTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAAgtaaggaatc ... tgttctccagCGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTCACTTTAGCTGGCCTGACTGTTAGGAGTTACCGCTACTATGATCCTGCAA




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