1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
ACAAAATATTTTATCAATTGTTGGATGGGTCTGGTGAATATACTCTAGTTTATGAAGACAGTGAAGGAGACAGGATGCTGGTTGGGGACGTGCCATGGAAgtaagtttgctggtcccccttgtcatttacagtttttactggcatttacaaaataatcaaatcttaaaaacaacaaaaggacactgccaccataatttatattaggcaccaccaaaccatctaaattatttttcctgttctccaattcctgcag
species | Oryza sativa |
transcript | LOC_Os01g53880.6 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TATGAAGACAGTGAGGGAGACAGGATGCTGGTNGGGGACGTGCCATGGAA AGTATTTGTCTCAACTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCTEST: gi|29675176|gb|CB671451.1|CB671451
genomic: TATGAAGACAGTGAAGGAGACAGGATGCTGGTTGGGGACGTGCCATGGAAgtaagtttgc ... attcctgcagAGTATTTGTCTCAACTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCT
EST: TATGAAGACAGTGAAGGAGACAGGATGCTGGTTGGGGACGTGCCATGGAA AGTATTTGTCTCAACTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCTEST: gi|86254278|gb|CI059005.1|CI059005
genomic: TATGAAGACAGTGAAGGAGACAGGATGCTGGTTGGGGACGTGCCATGGAAgtaagtttgc ... attcctgcagAGTATTTGTCTCAACTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCT
EST: TATGAAGACAGTGAAGGAGACAGGATGCTGGTTGGGGACGTGCCATGGAA AGTATTTGTCTCAACTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCTEST: gi|86431162|gb|CI083585.1|CI083585
genomic: TATGAAGACAGTGAAGGAGACAGGATGCTGGTTGGGGACGTGCCATGGAAgtaagtttgc ... attcctgcagAGTATTTGTCTCAACTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCT
EST: TATGAAGACAGTGAAGGAGACAGGATGCTGGTTGGGGACGTGCCATGGAA AGTATTTGTCTCAACTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCTEST: gi|86842279|gb|CI335208.1|CI335208
genomic: TATGAAGACAGTGAAGGAGACAGGATGCTGGTTGGGGACGTGCCATGGAAgtaagtttgc ... attcctgcagAGTATTTGTCTCAACTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCT
EST: TATGAAGACAGTGAAGGAGACAGGATGCTGGTTGGGGACGTGCCATGGAA AGTATTTGTCTCAACTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCTEST: gi|29672643|gb|CB668918.1|CB668918
genomic: TATGAAGACAGTGAAGGAGACAGGATGCTGGTTGGGGACGTGCCATGGAAgtaagtttgc ... attcctgcagAGTATTTGTCTCAACTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCT
EST: TATGAAGACAGTGAAGGAGACAGGATGCTGGTTGGGGACGTGCCATGGAA AGTATTTGTCTCAACTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCTEST: gi|4714720|gb|AU055837.1|AU055837
genomic: TATGAAGACAGTGAAGGAGACAGGATGCTGGTTGGGGACGTGCCATGGAAgtaagtttgc ... attcctgcagAGTATTTGTCTCAACTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCT
EST: TATGAAGACAGTGANGGAGACAGGATGCTGGTTGGGGACGTGCCATGGAA AGTATTTGTCTCAACTGCTAAAAGGCTGAGGGTTCTAAGGCGTTCAGAGCTEST: gi|88908179|gb|CI090774.1|CI090774
genomic: TATGAAGACAGTGAAGGAGACAGGATGCTGGTTGGGGACGTGCCATGGAAgtaagtttgc ... attcctgcagAGTATTTGTCTCAACTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCT
EST: ATGAAGACAGTGAAGGAGACAGGATGCT-GTTNGGGGACGTGCCATGGAA AGTATTTGTCTCAACTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCTEST: gi|29679028|gb|CB675303.1|CB675303
genomic: ATGAAGACAGTGAAGGAGACAGGATGCTGGTT-GGGGACGTGCCATGGAAgtaagtttgc ... attcctgcagAGTATTTGTCTCAACTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCT
EST: TATGAAGACAGTGAAGGAGACAGGATGCTGGTTGGGGACGTGCCATGGAA AGTATTTGTCTCAACTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCTEST: gi|88227853|gb|CI227333.1|CI227333
genomic: TATGAAGACAGTGAAGGAGACAGGATGCTGGTTGGGGACGTGCCATGGAAgtaagtttgc ... attcctgcagAGTATTTGTCTCAACTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCT
EST: GACAGGATGCTGTTTGGGGACGTGCCATGGAA AGTATTTGTCTCAACTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCTEST: gi|88271388|gb|CI387441.1|CI387441
genomic: GACAGGATGCTGGTTGGGGACGTGCCATGGAAgtaagtttgc ... attcctgcagAGTATTTGTCTCAACTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCT
EST: TATGAAGACAGTGAAGGAGACAGGATGCTGGTTGGGGACGTGCCATGGAA AGTATTTGTCTCAACTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCTEST: gi|88274057|gb|CI394463.1|CI394463
genomic: TATGAAGACAGTGAAGGAGACAGGATGCTGGTTGGGGACGTGCCATGGAAgtaagtttgc ... attcctgcagAGTATTTGTCTCAACTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCT
EST: GGGACGTGCCATGGAA AGTATTTGTCTCAACTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCTEST: gi|13420516|gb|AU174606.1|AU174606
genomic: GGGACGTGCCATGGAAgtaagtttgc ... attcctgcagAGTATTTGTCTCAACTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCT
EST: GGAGACAGGATGCTGGTTGGGGACGTGCCATGGAA AGTATTTGTCTCAACTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCTEST: gi|88830109|gb|CI074781.1|CI074781
genomic: GGAGACAGGATGCTGGTTGGGGACGTGCCATGGAAgtaagtttgc ... attcctgcagAGTATTTGTCTCAACTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCT
EST: TATGAAGACAGTGAAGGAGACAGGATGCTGGTTGGGGACGTGCCATGGAA AGTATTTGTCTCAACTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCTEST: gi|58696125|gb|CK084812.1|CK084812
genomic: TATGAAGACAGTGAAGGAGACAGGATGCTGGTTGGGGACGTGCCATGGAAgtaagtttgc ... attcctgcagAGTATTTGTCTCAACTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCT
EST: TATGAAGACAGTGAAGGAGACAGGATGCTGGTTGGGGACGTGCCATGGAA AGTATTTGTCTCAACTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCTEST: gi|4715467|gb|AU056584.1|AU056584
genomic: TATGAAGACAGTGAAGGAGACAGGATGCTGGTTGGGGACGTGCCATGGAAgtaagtttgc ... attcctgcagAGTATTTGTCTCAACTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCT
EST: ATGAAGACAGTGAAGGAGACAGGGATGCTGGTTGGGGACGTGCCATGGAA AGTTATTTGTCTCAACTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCEST: gi|88831238|gb|CI082048.1|CI082048
genomic: ATGAAGACAGTGAAGGAGACAGG-ATGCTGGTTGGGGACGTGCCATGGAAgtaagtttgc ... attcctgcagAGT-ATTTGTCTCAACTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGC
EST: TATGAAGACAGTGAAGGAGACAGGATGCTGGTTGGGGACGTGCCATGGAA AGTATTTGTCTCAACTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCTEST: gi|25798457|gb|CA754418.1|CA754418
genomic: TATGAAGACAGTGAAGGAGACAGGATGCTGGTTGGGGACGTGCCATGGAAgtaagtttgc ... attcctgcagAGTATTTGTCTCAACTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCT
EST: TATGAAGACAGTGAAGGAGACAGGATGCTGGTTGGGGACGTGCCATGGAA AGTATTTGTCTCAACTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCTEST: gi|88269311|gb|CI380609.1|CI380609
genomic: TATGAAGACAGTGAAGGAGACAGGATGCTGGTTGGGGACGTGCCATGGAAgtaagtttgc ... attcctgcagAGTATTTGTCTCAACTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCT
EST: ATGAAGACAAGTGAAGGAGACAGGATGCTGGTTGGGGACGTGCCATGGAA AGTATTTGTCTCAACTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCTEST: gi|88831004|gb|CI080428.1|CI080428
genomic: ATGAAGAC-AGTGAAGGAGACAGGATGCTGGTTGGGGACGTGCCATGGAAgtaagtttgc ... attcctgcagAGTATTTGTCTCAACTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCT
EST: TATGAAGACAGTGAAGGAGACAGGATGCTGGTTGGGGACGTGCCATGGAA AGTATTTGTCTCAACTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCTEST: gi|29643256|gb|CB648263.1|CB648263
genomic: TATGAAGACAGTGAAGGAGACAGGATGCTGGTTGGGGACGTGCCATGGAAgtaagtttgc ... attcctgcagAGTATTTGTCTCAACTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCT
EST: TATGAAGACAGTGAAGGAGACAGGATGCTGGTTGGGGACGTGCCATGGAA AGTATTTGTCTCAACTGCTAAAAGGCTGAGGGTTTTAAGGAGTTCAGAGCTEST: gi|29675174|gb|CB671449.1|CB671449
genomic: TATGAAGACAGTGAAGGAGACAGGATGCTGGTTGGGGACGTGCCATGGAAgtaagtttgc ... attcctgcagAGTATTTGTCTCAACTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCT
EST: TATGAAGACAGTGAAGGAGACAGGATGCTGGTTGGGGACGTGCCATGGAA AGTATTTGTCTCAACTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCTEST: gi|29639753|gb|CB644762.1|CB644762
genomic: TATGAAGACAGTGAAGGAGACAGGATGCTGGTTGGGGACGTGCCATGGAAgtaagtttgc ... attcctgcagAGTATTTGTCTCAACTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCT
EST: TATGAAGACAGTGAAGGAGACAGGATGCTGGTTGGGGACGTGCCATGGAA AGTATTTGTCTCAACTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCTEST: gi|86884571|gb|CI312950.1|CI312950
genomic: TATGAAGACAGTGAAGGAGACAGGATGCTGGTTGGGGACGTGCCATGGAAgtaagtttgc ... attcctgcagAGTATTTGTCTCAACTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCT
EST: TATGAAGACAGTGAAGGAGACAGGATGCTGGTTGGGGACGTGCCATGGAA AGTATTTGTCTCAACTGCTAAAAGGCTGA-GGTTCTAAGGAGTTCAGAGCTEST: gi|89177420|gb|CI250869.1|CI250869
genomic: TATGAAGACAGTGAAGGAGACAGGATGCTGGTTGGGGACGTGCCATGGAAgtaagtttgc ... attcctgcagAGTATTTGTCTCAACTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCT
EST: TATGAAGACAGTGAAGGAGACAGGATGCTGGTTGGGGACGTGCCATGGAA AGTATTTGTCTCAACTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCT
genomic: TATGAAGACAGTGAAGGAGACAGGATGCTGGTTGGGGACGTGCCATGGAAgtaagtttgc ... attcctgcagAGTATTTGTCTCAACTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACAAAATATTTTATCAATTGTTGGATGGGTCTGGTGAATATACTCTAGTTTATGAAGACAGTGAAGGAGACAGGATGCTGGTTGGGGACGTGCCATGGAAgtaagtttgctggtcccccttgtcatttacagtttttactggcatttacaaaataatcaaatcttaaaaacaacaaaaggacactgccaccataatttatattaggcaccaccaaaccatctaaattatttttcctgttctccaattcctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA