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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAAAATATTTTATCAATTGTTGGATGGGTCTGGTGAATATACTCTAGTTTATGAAGACAGTGAAGGAGACAGGATGCTGGTTGGGGACGTGCCATGGAAgtaagtttgctggtcccccttgtcatttacagtttttactggcatttacaaaataatcaaatcttaaaaacaacaaaaggacactgccaccataatttatattaggcaccaccaaaccatctaaattatttttcctgttctccaattcctgcag

Basic information

species Oryza sativa
transcript LOC_Os01g53880.4
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g53880.4 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G057067_T02 (Zea mays), 5'ss of exon 4
ACAAAATATTTTATCAATTGTTGGATGGGTCTGGTGAATATACTCTAGTTTATGAAGACAGTGAAGGAGACAGGATGCTGGTTGGGGACGTGCCATGGAAgtaagtttgctggtcccccttgtcatttacagtttttactggcatttacaaaataatcaaatcttaaaaac--aacaaaaggacactgccacca-taatttatattaggcaccaccaaaccatctaaattatttttcctgttctccaattcctgcag
  || ||||| | ||||||||||||||| ||||| |||||||| || || || |||||||  |||||||||||||||||||| ||||||||||| |||||||||| ||        ||  |||||||||| ||     |   |  |  ||| | ||  |  |||  |||||  ||       | ||||| | || ||| ||  |  | | |  |                                           
GAAAGATATTCTCTCAATTGTTGGATGGATCTGGCGAATATACCCTGGTCTACGAAGACAACGAAGGAGACAGGATGCTGGTAGGGGACGTGCCGTGGAAgtaagctt--------cctctgtcatttacggtccaaccgcaccctaccaacagaaaaacttctctaaaactgaatcgtcaaatactgctaacactaacttgaagaatgaaatatag----------------------------------------

upper sequence: LOC_Os01g53880.4 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G057067_T04 (Zea mays), 5'ss of exon 4
--------------------ACAAAATATTTTATCAATTGTTGGATGGGTCTGGTGAATATACTCTAGTTTATGAAGACAGTGAAGGAGACAGGATGCTGGTTGGGGACGTGCCATGGAAgtaagtttgctggtcccccttgtcattta--cagtttttactggca------tttacaaaataatcaaatcttaaaaacaacaaaaggacactgccaccataatttatattaggcacc------accaaaccatctaaattatttttcctgttctccaattcctgcag
                      || ||||| | ||||||||||||||| ||||| |||||||| || || || |||||||  |||||||||||||||||||| ||||||||||| |||||||||| || ||  |  |  ||    |  |  |      |||   ||       ||    || | | ||   | ||| ||  | ||     |||   |  || |  |||| ||    ||           ||||||| ||     || | |  | |   || |||||||
GGATATGTCTCCAACTGCTGGAAAGATATTCTCTCAATTGTTGGATGGATCTGGCGAATATACCCTGGTCTACGAAGACAACGAAGGAGACAGGATGCTGgtaggggacgtgccgtggaagtaagcttcctc-tgtcatttacggtccaaccgcaccctaccaacagaaaaacttctctaaaactgaatcgtcaaatactgctaacactaacttgaagaatgaaatatagtacaggcctactttgttgcaccatctgaa--gccttcctttgtatgtgatccctgcag

upper sequence: LOC_Os01g53880.4 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G057067_T01 (Zea mays), 5'ss of exon 4
ACAAAATATTTTATCAATTGTTGGATGGGTCTGGTGAATATACTCTAGTTTATGAAGACAGTGAAGGAGACAGGATGCTGGTTGGGGACGTGCCATGGAAgtaagtttgctggtcccccttgtcattta--cagtttttactggca------tttacaaaataatcaaatcttaaaaacaacaaaaggacactgccaccataatttatattaggcacc------accaaaccatctaaattatttttcctgttctccaattcctgcag
  || ||||| | ||||||||||||||| ||||| |||||||| || || || |||||||  |||||||||||||||||||| ||||||||||| |||||||||| || ||  |  |  ||    |  |  |      |||   ||       ||    || | | ||   | ||| ||  | ||     |||   |  || |  |||| ||    ||           ||||||| ||     || | |  | |   || |||||||
GAAAGATATTCTCTCAATTGTTGGATGGATCTGGCGAATATACCCTGGTCTACGAAGACAACGAAGGAGACAGGATGCTGGTAGGGGACGTGCCGTGGAAgtaagcttcctc-tgtcatttacggtccaaccgcaccctaccaacagaaaaacttctctaaaactgaatcgtcaaatactgctaacactaacttgaagaatgaaatatagtacaggcctactttgttgcaccatctgaa--gccttcctttgtatgtgatccctgcag

upper sequence: LOC_Os01g53880.4 (Oryza sativa), 5'ss of exon 5
lower sequence: GLYMA08G21460.1 (Glycine max), 5'ss of exon 3
ACAAAATATTTTATCAATTGTTGGATGGGTCTGGTGAATATACTCTAGTTTATGAAGACAGTGAAGGAGACAGGATGCTGGTTGGGGACGTGCCATGGAAgtaagtttgctggtcccccttgtcatttacagtttttactggcatttacaaaataatcaaatcttaaaaacaacaaaaggacactgccaccataatttatattaggcaccaccaaaccatctaaattatttttcctgttctccaattcctgcag
| |||     | |    || |||| |||   ||| ||||||||||| |||||||| || | |||||||||||||||||| ||||| || ||||| ||| ||||||  |  |           ||   | || ||||||      | ||   |||| |  | ||      |  || | ||     | | |   |    |  | | |                                                 
AGAAATCCAATAAGGGTTTATTGGTTGGAAGTGGGGAATATACTCTTGTTTATGAGGATAATGAAGGAGACAGGATGCTTGTTGGAGATGTGCCGTGGCAgtaagcatcttatcaatgtggatctgatgca-tttttatcttattctattcaatattatattcc-----atgactatagtttgatacaatattgccatgcagtgga------------------------------------------------

upper sequence: LOC_Os01g53880.4 (Oryza sativa), 5'ss of exon 5
lower sequence: GLYMA15G02350.1 (Glycine max), 5'ss of exon 4
ACAAAATATTTTATCAATTGTTGGATGGGTCTGGTGAATATACTCTAGTTTATGAAGACAGTGAAGGAGACAGGATGCTGGTTGGGGACGTGCCATGGAAgtaagtttgctggtcccccttgtcatttacagtttttactggcatttacaaaataatcaaatcttaaaaacaacaaaaggacactgccaccataatttatattaggcaccaccaaaccatctaaattatttttcctgttctccaattcctgcag
| |||  | ||      || ||||||||   ||| || |||||||| |||||||| || | |||||||||||||||||| |||||||| ||||||||| ||||||  |  |        |    ||  |   | | ||||   ||||   |  | ||  ||| ||| |    || | |    ||   |||||     | | | ||| ||||                                           
AGAAAGCAATTACGGGGTTATTGGATGGAAGTGGAGAGTATACTCTTGTTTATGAGGATAATGAAGGAGACAGGATGCTTGTTGGGGATGTGCCATGGCAgtaagcatctta-------tcactatcaatcttatgtactattatttt--attttattcaatattatattatactatattgtacc-tcaccacttgatgtgtgagg-acca-------------------------------------------

upper sequence: LOC_Os01g53880.4 (Oryza sativa), 5'ss of exon 5
lower sequence: GLYMA07G01800.1 (Glycine max), 5'ss of exon 3
ACAAAATATTTTATCAATT-GTTGGATGGGTCTGGTGAATATACTCTAGTTTATGAAGACAGTGAAGGAGACAGGATGCTGGTTGGGGACGTGCCATGGAAgtaagtttgctggtcccccttgtcatttacagtttttactggcatttacaaaataatcaaatcttaaaaacaacaaaaggacactgccaccataatttatattaggcaccaccaaaccatctaaattatttttcctgttctccaattcctgcag
   ||||    ||    ||  |||| |||   ||| ||||||||||| |||||||| || | |||||||||||||||||| ||||| || ||||| ||| ||||||     |           ||   | || ||||||      | ||   |||| |  | ||   |  || | |    || ||     ||||    |  | ||                                                  
-AGAAATCCAATACGGGTTTATTGGTTGGAAGTGGGGAATATACTCTTGTTTATGAGGATAATGAAGGAGACAGGATGCTTGTTGGAGATGTGCCGTGGCAgtaagcaccttatcattgtggatctgatgca-tttttatcttattctattcaatattatattcc--atgactatagtttgatac-attgccatgcagtggagta--------------------------------------------------

upper sequence: LOC_Os01g53880.4 (Oryza sativa), 5'ss of exon 5
lower sequence: GLYMA13G43050.1 (Glycine max), 5'ss of exon 4
ACAAAATATTTTATCAATTGTTGGATGGGTCTGGTGAATATACTCTAGTTTATGAAGACAGTGAAGGAGACAGGATGCTGGTTGGGGACGTGCCATGGAAgtaagtttgctggtcccccttgtcatttacagtttttactggcatttacaaaataatcaaatcttaaaaacaacaaaaggacact-gccaccataatttatattaggcaccaccaaaccatctaaattatttttcctgttctccaattcctgcag
| |||  | ||      || ||||||||   ||| || | |||||| |||||||| || | |||||||||||||||||| |||||||| ||||||||| ||||||  |  |           |  | | ||  | ||| |    ||||   |||| |   || ||| | |    |      |||| |     |  |   ||                                                      
AGAAAGCAATTACGGGGTTATTGGATGGAAGTGGAGAGTTTACTCTTGTTTATGAGGATAATGAAGGAGACAGGATGCTTGTTGGGGATGTGCCATGGCAgtaagcatcttatcagtatcaattttatgca-ctattattttattttattcaatactattatattatatattgtacctcaccacttgatgtgaggaccaat------------------------------------------------------

upper sequence: LOC_Os01g53880.4 (Oryza sativa), 5'ss of exon 5
lower sequence: Vv04s0008g00220.t01 (Vitis vinifera), 5'ss of exon 4
-ACAAAATATTTTATCAATTGTTGGATGGGTCTGGTGAATATACTCTAGTTTATGAAGACAGTGAAGGAGACAGGATGCTGGTTGGGGACGTGCCATGGAAgtaag--tttgctggtcccccttgtcatttacagtttttactggcatttacaaaataatcaaatcttaaaaacaacaaaaggacactgccaccataatttatattaggcaccaccaaaccatctaaattatttttcctgttctccaattcctgcag
 | |||  ||   |   ||| || |||||   |||||||||||||||||||||||| || | |||||||||||| ||||| ||||| || || |||||| ||||||  | | ||      |||   | |  | |||     |   |||| | |||  || | | | ||  |  ||| |||       |   | ||| ||      | ||||    |    ||||| |||| |  |   |    | ||          
CAAAAACCATGGCAG-GATTATTCGATGGAAGTGGTGAATATACTCTAGTTTATGAGGATAATGAAGGAGACAGAATGCTTGTTGGAGATGTCCCATGGCAgtaagcatctactaccaaacctacgcctccaaagtc----caaacattcaaaaatcaaacca-ttttcgacccaataaa-------tataagcatgata---gctgggcaatctc---tcatctgaattttaatatattccttgcag---------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86431330|gb|CI084941.1|CI084941
EST:     TATGAAGACAGTGAGGGAGACAGGATGCTGGTNGGGGACGTGCCATGGAA                         AGTATTTGTCTCAACTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCT
genomic: TATGAAGACAGTGAAGGAGACAGGATGCTGGTTGGGGACGTGCCATGGAAgtaagtttgc ... attcctgcagAGTATTTGTCTCAACTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCT
EST: gi|29675176|gb|CB671451.1|CB671451
EST:     TATGAAGACAGTGAAGGAGACAGGATGCTGGTTGGGGACGTGCCATGGAA                         AGTATTTGTCTCAACTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCT
genomic: TATGAAGACAGTGAAGGAGACAGGATGCTGGTTGGGGACGTGCCATGGAAgtaagtttgc ... attcctgcagAGTATTTGTCTCAACTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCT
EST: gi|86254278|gb|CI059005.1|CI059005
EST:     TATGAAGACAGTGAAGGAGACAGGATGCTGGTTGGGGACGTGCCATGGAA                         AGTATTTGTCTCAACTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCT
genomic: TATGAAGACAGTGAAGGAGACAGGATGCTGGTTGGGGACGTGCCATGGAAgtaagtttgc ... attcctgcagAGTATTTGTCTCAACTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCT
EST: gi|86431162|gb|CI083585.1|CI083585
EST:     TATGAAGACAGTGAAGGAGACAGGATGCTGGTTGGGGACGTGCCATGGAA                         AGTATTTGTCTCAACTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCT
genomic: TATGAAGACAGTGAAGGAGACAGGATGCTGGTTGGGGACGTGCCATGGAAgtaagtttgc ... attcctgcagAGTATTTGTCTCAACTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCT
EST: gi|86842279|gb|CI335208.1|CI335208
EST:     TATGAAGACAGTGAAGGAGACAGGATGCTGGTTGGGGACGTGCCATGGAA                         AGTATTTGTCTCAACTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCT
genomic: TATGAAGACAGTGAAGGAGACAGGATGCTGGTTGGGGACGTGCCATGGAAgtaagtttgc ... attcctgcagAGTATTTGTCTCAACTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCT
EST: gi|29672643|gb|CB668918.1|CB668918
EST:     TATGAAGACAGTGAAGGAGACAGGATGCTGGTTGGGGACGTGCCATGGAA                         AGTATTTGTCTCAACTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCT
genomic: TATGAAGACAGTGAAGGAGACAGGATGCTGGTTGGGGACGTGCCATGGAAgtaagtttgc ... attcctgcagAGTATTTGTCTCAACTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCT
EST: gi|4714720|gb|AU055837.1|AU055837
EST:     TATGAAGACAGTGANGGAGACAGGATGCTGGTTGGGGACGTGCCATGGAA                         AGTATTTGTCTCAACTGCTAAAAGGCTGAGGGTTCTAAGGCGTTCAGAGCT
genomic: TATGAAGACAGTGAAGGAGACAGGATGCTGGTTGGGGACGTGCCATGGAAgtaagtttgc ... attcctgcagAGTATTTGTCTCAACTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCT
EST: gi|88908179|gb|CI090774.1|CI090774
EST:     ATGAAGACAGTGAAGGAGACAGGATGCT-GTTNGGGGACGTGCCATGGAA                         AGTATTTGTCTCAACTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCT
genomic: ATGAAGACAGTGAAGGAGACAGGATGCTGGTT-GGGGACGTGCCATGGAAgtaagtttgc ... attcctgcagAGTATTTGTCTCAACTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCT
EST: gi|29679028|gb|CB675303.1|CB675303
EST:     TATGAAGACAGTGAAGGAGACAGGATGCTGGTTGGGGACGTGCCATGGAA                         AGTATTTGTCTCAACTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCT
genomic: TATGAAGACAGTGAAGGAGACAGGATGCTGGTTGGGGACGTGCCATGGAAgtaagtttgc ... attcctgcagAGTATTTGTCTCAACTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCT
EST: gi|88227853|gb|CI227333.1|CI227333
EST:     GACAGGATGCTGTTTGGGGACGTGCCATGGAA                         AGTATTTGTCTCAACTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCT
genomic: GACAGGATGCTGGTTGGGGACGTGCCATGGAAgtaagtttgc ... attcctgcagAGTATTTGTCTCAACTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCT
EST: gi|88271388|gb|CI387441.1|CI387441
EST:     TATGAAGACAGTGAAGGAGACAGGATGCTGGTTGGGGACGTGCCATGGAA                         AGTATTTGTCTCAACTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCT
genomic: TATGAAGACAGTGAAGGAGACAGGATGCTGGTTGGGGACGTGCCATGGAAgtaagtttgc ... attcctgcagAGTATTTGTCTCAACTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCT
EST: gi|88274057|gb|CI394463.1|CI394463
EST:     GGGACGTGCCATGGAA                         AGTATTTGTCTCAACTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCT
genomic: GGGACGTGCCATGGAAgtaagtttgc ... attcctgcagAGTATTTGTCTCAACTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCT
EST: gi|13420516|gb|AU174606.1|AU174606
EST:     GGAGACAGGATGCTGGTTGGGGACGTGCCATGGAA                         AGTATTTGTCTCAACTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCT
genomic: GGAGACAGGATGCTGGTTGGGGACGTGCCATGGAAgtaagtttgc ... attcctgcagAGTATTTGTCTCAACTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCT
EST: gi|88830109|gb|CI074781.1|CI074781
EST:     TATGAAGACAGTGAAGGAGACAGGATGCTGGTTGGGGACGTGCCATGGAA                         AGTATTTGTCTCAACTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCT
genomic: TATGAAGACAGTGAAGGAGACAGGATGCTGGTTGGGGACGTGCCATGGAAgtaagtttgc ... attcctgcagAGTATTTGTCTCAACTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCT
EST: gi|58696125|gb|CK084812.1|CK084812
EST:     TATGAAGACAGTGAAGGAGACAGGATGCTGGTTGGGGACGTGCCATGGAA                         AGTATTTGTCTCAACTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCT
genomic: TATGAAGACAGTGAAGGAGACAGGATGCTGGTTGGGGACGTGCCATGGAAgtaagtttgc ... attcctgcagAGTATTTGTCTCAACTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCT
EST: gi|4715467|gb|AU056584.1|AU056584
EST:     ATGAAGACAGTGAAGGAGACAGGGATGCTGGTTGGGGACGTGCCATGGAA                         AGTTATTTGTCTCAACTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGC
genomic: ATGAAGACAGTGAAGGAGACAGG-ATGCTGGTTGGGGACGTGCCATGGAAgtaagtttgc ... attcctgcagAGT-ATTTGTCTCAACTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGC
EST: gi|88831238|gb|CI082048.1|CI082048
EST:     TATGAAGACAGTGAAGGAGACAGGATGCTGGTTGGGGACGTGCCATGGAA                         AGTATTTGTCTCAACTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCT
genomic: TATGAAGACAGTGAAGGAGACAGGATGCTGGTTGGGGACGTGCCATGGAAgtaagtttgc ... attcctgcagAGTATTTGTCTCAACTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCT
EST: gi|25798457|gb|CA754418.1|CA754418
EST:     TATGAAGACAGTGAAGGAGACAGGATGCTGGTTGGGGACGTGCCATGGAA                         AGTATTTGTCTCAACTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCT
genomic: TATGAAGACAGTGAAGGAGACAGGATGCTGGTTGGGGACGTGCCATGGAAgtaagtttgc ... attcctgcagAGTATTTGTCTCAACTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCT
EST: gi|88269311|gb|CI380609.1|CI380609
EST:     ATGAAGACAAGTGAAGGAGACAGGATGCTGGTTGGGGACGTGCCATGGAA                         AGTATTTGTCTCAACTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCT
genomic: ATGAAGAC-AGTGAAGGAGACAGGATGCTGGTTGGGGACGTGCCATGGAAgtaagtttgc ... attcctgcagAGTATTTGTCTCAACTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCT
EST: gi|88831004|gb|CI080428.1|CI080428
EST:     TATGAAGACAGTGAAGGAGACAGGATGCTGGTTGGGGACGTGCCATGGAA                         AGTATTTGTCTCAACTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCT
genomic: TATGAAGACAGTGAAGGAGACAGGATGCTGGTTGGGGACGTGCCATGGAAgtaagtttgc ... attcctgcagAGTATTTGTCTCAACTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCT
EST: gi|29643256|gb|CB648263.1|CB648263
EST:     TATGAAGACAGTGAAGGAGACAGGATGCTGGTTGGGGACGTGCCATGGAA                         AGTATTTGTCTCAACTGCTAAAAGGCTGAGGGTTTTAAGGAGTTCAGAGCT
genomic: TATGAAGACAGTGAAGGAGACAGGATGCTGGTTGGGGACGTGCCATGGAAgtaagtttgc ... attcctgcagAGTATTTGTCTCAACTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCT
EST: gi|29675174|gb|CB671449.1|CB671449
EST:     TATGAAGACAGTGAAGGAGACAGGATGCTGGTTGGGGACGTGCCATGGAA                         AGTATTTGTCTCAACTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCT
genomic: TATGAAGACAGTGAAGGAGACAGGATGCTGGTTGGGGACGTGCCATGGAAgtaagtttgc ... attcctgcagAGTATTTGTCTCAACTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCT
EST: gi|29639753|gb|CB644762.1|CB644762
EST:     TATGAAGACAGTGAAGGAGACAGGATGCTGGTTGGGGACGTGCCATGGAA                         AGTATTTGTCTCAACTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCT
genomic: TATGAAGACAGTGAAGGAGACAGGATGCTGGTTGGGGACGTGCCATGGAAgtaagtttgc ... attcctgcagAGTATTTGTCTCAACTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCT
EST: gi|86884571|gb|CI312950.1|CI312950
EST:     TATGAAGACAGTGAAGGAGACAGGATGCTGGTTGGGGACGTGCCATGGAA                         AGTATTTGTCTCAACTGCTAAAAGGCTGA-GGTTCTAAGGAGTTCAGAGCT
genomic: TATGAAGACAGTGAAGGAGACAGGATGCTGGTTGGGGACGTGCCATGGAAgtaagtttgc ... attcctgcagAGTATTTGTCTCAACTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCT
EST: gi|89177420|gb|CI250869.1|CI250869
EST:     TATGAAGACAGTGAAGGAGACAGGATGCTGGTTGGGGACGTGCCATGGAA                         AGTATTTGTCTCAACTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCT
genomic: TATGAAGACAGTGAAGGAGACAGGATGCTGGTTGGGGACGTGCCATGGAAgtaagtttgc ... attcctgcagAGTATTTGTCTCAACTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACAAAATATTTTATCAATTGTTGGATGGGTCTGGTGAATATACTCTAGTTTATGAAGACAGTGAAGGAGACAGGATGCTGGTTGGGGACGTGCCATGGAAgtaagtttgctggtcccccttgtcatttacagtttttactggcatttacaaaataatcaaatcttaaaaacaacaaaaggacactgccaccataatttatattaggcaccaccaaaccatctaaattatttttcctgttctccaattcctgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CATGGA