1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CTTTGTCTGCTCGTGTTGCCTTCATGTCCTCTTGTGCCATTTTTTGGAACTTCTACCTGTCAACCACTATGAGCAAGTGAAACCTCTAGTATACCTTCAGgttggtcttggtacattctatattttgtttgacttggtgcacagtagctgcaatttaagttctgcaaatttggatgaacctatttgttgccagactgacagcacttaatgcacaattgcattcctttttctgtaacttttgctgaacaatacgataatgttgtag
species | Oryza sativa |
transcript | LOC_Os01g53060.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TTGTACCTGTCAACCACTATGAGCAAGTGAAACCTCTAGTATACCTTCAG GGCATGTACAAGCCTCATTTGTCATGATACATGTGGTTCCGTAGCAAATGTEST: gi|38477210|gb|CF961343.1|CF961343
genomic: TTCTACCTGTCAACCACTATGAGCAAGTGAAACCTCTAGTATACCTTCAGgttggtcttg ... aatgttgtagGGCATGTACAAGCCTCATTTGTCATGATACATGTGGTTCCGTAGCAAATGT
EST: TTCTACCTGTCAACCACTATGAGCAAGTGAAACCTCTAGTATACCTTCAG GGCATGTACAAGCCTCATTTGTCATGATACATGTGGTTCCGTAGCAAATGTEST: gi|88250040|gb|CI249889.1|CI249889
genomic: TTCTACCTGTCAACCACTATGAGCAAGTGAAACCTCTAGTATACCTTCAGgttggtcttg ... aatgttgtagGGCATGTACAAGCCTCATTTGTCATGATACATGTGGTTCCGTAGCAAATGT
EST: TTCTACCTGTCAACCACTATGAGCAAGTGAAACCTCTAGTATACCTTCAG GGCATGTACAAGCCTCATTTGTCATGATACATGTGGTTCCGTAGCAAATGTEST: gi|88956940|gb|CI009142.1|CI009142
genomic: TTCTACCTGTCAACCACTATGAGCAAGTGAAACCTCTAGTATACCTTCAGgttggtcttg ... aatgttgtagGGCATGTACAAGCCTCATTTGTCATGATACATGTGGTTCCGTAGCAAATGT
EST: TTCTACCTGTCAACCACTATGAGCAAGTGAAACCTCTAGTATACCTTCAG GGCATGTACAAGCCTCATTTGTCATGATACATGTGGTTCCGTAGCAAATGTEST: gi|88442514|gb|CI544081.1|CI544081
genomic: TTCTACCTGTCAACCACTATGAGCAAGTGAAACCTCTAGTATACCTTCAGgttggtcttg ... aatgttgtagGGCATGTACAAGCCTCATTTGTCATGATACATGTGGTTCCGTAGCAAATGT
EST: GCAAGTGAAACCTCTAGTATACCTTCAG GGCATGTACAAGCCTCATTTGTCATGATACATGTGGTTCCGTAGCAAATGTEST: gi|25806625|gb|CA762586.1|CA762586
genomic: GCAAGTGAAACCTCTAGTATACCTTCAGgttggtcttg ... aatgttgtagGGCATGTACAAGCCTCATTTGTCATGATACATGTGGTTCCGTAGCAAATGT
EST: TTCTACCTGTCACCCACTATGAGCAAGTGAAACCTCTAGTATACCTTCAG GGCATGTACAAGCCTCATTTGTCATGATACATGTGGTTCCGTAGCAAATGTEST: gi|88233529|gb|CI233378.1|CI233378
genomic: TTCTACCTGTCAACCACTATGAGCAAGTGAAACCTCTAGTATACCTTCAGgttggtcttg ... aatgttgtagGGCATGTACAAGCCTCATTTGTCATGATACATGTGGTTCCGTAGCAAATGT
EST: TTCTACCTGTCAACCACTATGAGCAAGTGAAACCTCTAGTATACCTTCAG GGCATGTACAAGCCTCATTTGTCATGATACATGTGGTTCCGTAGCAAATGT
genomic: TTCTACCTGTCAACCACTATGAGCAAGTGAAACCTCTAGTATACCTTCAGgttggtcttg ... aatgttgtagGGCATGTACAAGCCTCATTTGTCATGATACATGTGGTTCCGTAGCAAATGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTTGTCTGCTCGTGTTGCCTTCATGTCCTCTTGTGCCATTTTTTGGAACTTCTACCTGTCAACCACTATGAGCAAGTGAAACCTCTAGTATACCTTCAGgttggtcttggtacattctatattttgtttgacttggtgcacagtagctgcaatttaagttctgcaaatttggatgaacctatttgttgccagactgacagcacttaatgcacaattgcattcctttttctgtaacttttgctgaacaatacgataatgttgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG