1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
AGTCGAGGAGCTTCGGCGACGAAGGTTTAGGACCAGTGCCGGCTCGGTGGAAAGGGGTGTGCCAAGGAGGGGATTCCTTCTCTCCCTCTTCCTGCAACAGgtcagctagctaaaacatagtagtattattgttttcatcgattccgtctttaaaatacaaaaaaaaagattaaacataatccaatccgatccctaaacat...
species | Oryza sativa |
transcript | LOC_Os01g52750.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AAAGGGGTGTGCCAAGGAGGGGATTCCTTCTCTCCCTCTTCCTGCAACAG GAAGATCATCGGTGCGAGGTACTACGTCAAGGGGTACGAGGCCAGGTACGGEST: gi|29640667|gb|CB645676.1|CB645676
genomic: AAAGGGGTGTGCCAAGGAGGGGATTCCTTCTCTCCCTCTTCCTGCAACAGgtcagctagc ... gtgtacgcagGAAGATCATCGGTGCGAGGTACTACGTCAAGGCGTACGAGGCCAGGTACGG
EST: AAAGGGGTGTGCCAAGGAGGGGATTCCTTCTCTCCCTCTTCCTGCAACAG GAAGATCATCGGTGCGAGGTACTACGTCAAGGCGTACGAGGCCAGGTACGG
genomic: AAAGGGGTGTGCCAAGGAGGGGATTCCTTCTCTCCCTCTTCCTGCAACAGgtcagctagc ... gtgtacgcagGAAGATCATCGGTGCGAGGTACTACGTCAAGGCGTACGAGGCCAGGTACGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGTCGAGGAGCTTCGGCGACGAAGGTTTAGGACCAGTGCCGGCTCGGTGGAAAGGGGTGTGCCAAGGAGGGGATTCCTTCTCTCCCTCTTCCTGCAACAGgtcagctagctaaaacatagtagtattattgttttcatcgattccgtctttaaaatacaaaaaaaaagattaaacataatccaatccgatccctaaacat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaaa