Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCCTAGGGGACCTGATACCCCTTTCATTGGCAGGACTCTGCCTAGATTTGTGGTTCGACAACTAGTCGGTGGCAGTTCTGAAATGAATCAAATGACATGgtatgcaggacttaattttcttgcataacttttggaagaactattccactttctttaaatattgtggcttgctgtagccaagcactccattttgaaattt...

Basic information

species Oryza sativa
transcript LOC_Os01g52140.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58597489|gb|CK008017.1|CK008017
EST:     GTGGTTCGACAACTAGTCGGTGGCAGTTCTGAAATGAATCAAATGACATG                         GCTGCTAGTATCGTCTAGTACTACTGGGGCTC
genomic: GTGGTTCGACAACTAGTCGGTGGCAGTTCTGAAATGAATCAAATGACATGgtatgcagga ... aatgaattagGCTGCTAGTATCGTCTAGTTCTACTGGGGCTC
EST: gi|89193185|gb|CI050483.1|CI050483
EST:     GTGGTTCGACAACTAGTCGGTGGCAGTTCTGAAATGAATCAAATGACATG                         GCTGCTAGTATCGTCTAGTTCTACTGGGGCTCCGGGAGCAACACATAATCC
genomic: GTGGTTCGACAACTAGTCGGTGGCAGTTCTGAAATGAATCAAATGACATGgtatgcagga ... aatgaattagGCTGCTAGTATCGTCTAGTTCTACTGGGGCTCCGGGAGCAACACATAATCC