1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TTCCTTATTTTGAAACTTCTGCAAAAGAGGACCGCAATGTCGACAGTGCGTTCTTGTCTGTCGCTAAGCTTGCTTTAGAGCATGAGCGTGATCAGGACATgtgagtagaatcatcttcctctctttgttgtcttgtcgaaaacattgactgtgtaagcttatgtcatgcatatgtgaatttccttgaatattttgttaaa...
species | Oryza sativa |
transcript | LOC_Os01g51700.2 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TTCTTGTCTGTCGCTAAGCTTGCTTTAGAGCATGAGCGTGATCAGGACAT CTACTTCCAGACGGTTGTTCCAGATCCTGTTCCAGAGGCTGAACAGAGAAGEST: gi|88240343|gb|CI239505.1|CI239505
genomic: TTCTTGTCTGTCGCTAAGCTTGCTTTAGAGCATGAGCGTGATCAGGACATgtgagtagaa ... tggccttcagCTACTTCCAGACGGTTGTTCCAGATCCTGTTCCAGAGGCTGAACAGAGAAG
EST: TTCTTGTCTGTCGCTAAGCTTGCTTTAGAGCATGAGCGTGATCAGGACAT CTACTTCCAGACGGTTGTTCCAGATCCTGTTCCAGAGGCTGAACAGAGAAGEST: gi|88466465|gb|CI532272.1|CI532272
genomic: TTCTTGTCTGTCGCTAAGCTTGCTTTAGAGCATGAGCGTGATCAGGACATgtgagtagaa ... tggccttcagCTACTTCCAGACGGTTGTTCCAGATCCTGTTCCAGAGGCTGAACAGAGAAG
EST: TTAGAGCATGAGCGTGATCAGGACAT CTACTTCCAGACGGTTGTTCCAGATCCTGTTCCAGAGGCTGAACAGAGAAGEST: gi|88216758|gb|CI216607.1|CI216607
genomic: TTAGAGCATGAGCGTGATCAGGACATgtgagtagaa ... tggccttcagCTACTTCCAGACGGTTGTTCCAGATCCTGTTCCAGAGGCTGAACAGAGAAG
EST: TTCTTGTCTGTCGCTAAGCTTGCTTTAGAGCATGAGCGTGATCAGGACAT CTACTTCCAGACGGTTGTTCCAGATCCTGTTCCAGAGGCTGAACAGAGAAGEST: gi|88439330|gb|CI536302.1|CI536302
genomic: TTCTTGTCTGTCGCTAAGCTTGCTTTAGAGCATGAGCGTGATCAGGACATgtgagtagaa ... tggccttcagCTACTTCCAGACGGTTGTTCCAGATCCTGTTCCAGAGGCTGAACAGAGAAG
EST: TCTGTCGCTAAGCTTGCTTTAGAGCATGAGCGTGATCAGGACAT CTACTTCCAGACGGTTGTTCCAGATCCTGTTCCAGAGGCTGAACAGAGAAGEST: gi|87032794|gb|CI268289.1|CI268289
genomic: TCTGTCGCTAAGCTTGCTTTAGAGCATGAGCGTGATCAGGACATgtgagtagaa ... tggccttcagCTACTTCCAGACGGTTGTTCCAGATCCTGTTCCAGAGGCTGAACAGAGAAG
EST: TTCTTGTCTGTCGCTAAGCTTGCTTTAGAGCATGAGCGTGATCAGGACAT CTACTTCCAGACGGTTGTTCTAGATCCTGTTCCAGAGGCTGAACAGAGAAGEST: gi|87035544|gb|CI190166.1|CI190166
genomic: TTCTTGTCTGTCGCTAAGCTTGCTTTAGAGCATGAGCGTGATCAGGACATgtgagtagaa ... tggccttcagCTACTTCCAGACGGTTGTTCCAGATCCTGTTCCAGAGGCTGAACAGAGAAG
EST: TTCTTGTCTGTCGCTAAGCTTGCTTTAGAGCATGAGCGTGATCAGGACAT CTACTTCCAGACGGTTGTTCCAGATCCTGTTCCAGAGGCTGAACAGAGAAGEST: gi|86545999|gb|CI186205.1|CI186205
genomic: TTCTTGTCTGTCGCTAAGCTTGCTTTAGAGCATGAGCGTGATCAGGACATgtgagtagaa ... tggccttcagCTACTTCCAGACGGTTGTTCCAGATCCTGTTCCAGAGGCTGAACAGAGAAG
EST: TTCTTGTCTGTCGCTAAGCTTGCTTTAGAGCATGAGCGTGATCAGGACAT CTACTTCCAGACGGTTGTTCCAGATCCTGTTCCAGAGGCTGAACAGAGAAGEST: gi|33809332|gb|CF330547.1|CF330547
genomic: TTCTTGTCTGTCGCTAAGCTTGCTTTAGAGCATGAGCGTGATCAGGACATgtgagtagaa ... tggccttcagCTACTTCCAGACGGTTGTTCCAGATCCTGTTCCAGAGGCTGAACAGAGAAG
EST: TGTCTGTCGCTAAGCTTGCTTTAGAGCATGAGCGTGATCAGGACAT CTACTTCCAGACGGTTGTTCCAGATCCTGTTCCAGAGGCTGAACAGAGAAGEST: gi|87035485|gb|CI190107.1|CI190107
genomic: TGTCTGTCGCTAAGCTTGCTTTAGAGCATGAGCGTGATCAGGACATgtgagtagaa ... tggccttcagCTACTTCCAGACGGTTGTTCCAGATCCTGTTCCAGAGGCTGAACAGAGAAG
EST: TTCTTGTCTGTCGCTAAGCTTGCTTTAGAGCATGAGCGTGATCAGGACAT CTACTTCCAGACGGTTGTTCCAGATCCTGTTCCAGAGGCTGAACAGAGAAGEST: gi|88256006|gb|CI358394.1|CI358394
genomic: TTCTTGTCTGTCGCTAAGCTTGCTTTAGAGCATGAGCGTGATCAGGACATgtgagtagaa ... tggccttcagCTACTTCCAGACGGTTGTTCCAGATCCTGTTCCAGAGGCTGAACAGAGAAG
EST: TTCTTGTCTGTCGCTAAGCTTGCTTTAGAGCATGAGCGTGATCAGGACAT CTACTTCCAGACGGTTGTTCCAGATCCTGTTCCAGAGGCTGAACAGAGAAG
genomic: TTCTTGTCTGTCGCTAAGCTTGCTTTAGAGCATGAGCGTGATCAGGACATgtgagtagaa ... tggccttcagCTACTTCCAGACGGTTGTTCCAGATCCTGTTCCAGAGGCTGAACAGAGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCCTTATTTTGAAACTTCTGCAAAAGAGGACCGCAATGTCGACAGTGCGTTCTTGTCTGTCGCTAAGCTTGCTTTAGAGCATGAGCGTGATCAGGACATgtgagtagaatcatcttcctctctttgttgtcttgtcgaaaacattgactgtgtaagcttatgtcatgcatatgtgaatttccttgaatattttgttaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA