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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTAAATAATACACATGGAAATACCCATGCAGGTCCAGTTGTGGCACCTCCAAAGGGAAGGCATCACCATTCTTTGCCTGTAAATAATACCCGTGTAAAAGgtattccaccgactgcacaactaccataatgaacctattgctggtaataaaatgattcatgaagttgtatcgagcag

Basic information

species Oryza sativa
transcript LOC_Os01g51290.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86876092|gb|CI325591.1|CI325591
EST:     AAAGGGAAGGCATCACCATTCTTTGCCTGTAAATAATACCCGTGTAAAAG                         GACCTGCCTATTCTCCTTCAAATTCTCCCAGTATCCATAGAAAACATGGCA
genomic: AAAGGGAAGGCATCACCATTCTTTGCCTGTAAATAATACCCGTGTAAAAGgtattccacc ... tatcgagcagGACCTGCCTATTCTCCTTCAAATTCTCCCAGTATCCATAGAAAACATGGCA
EST: gi|86487913|gb|CI130546.1|CI130546
EST:     AAAGGGAAGGCATCACCATTCTTTGCCTGTAAATAATACCCGTGTAAAAG                         GACCTGCCTATTCTCCTTCAAATTCTCCCAGTATCCATAGAAAACATGGCA
genomic: AAAGGGAAGGCATCACCATTCTTTGCCTGTAAATAATACCCGTGTAAAAGgtattccacc ... tatcgagcagGACCTGCCTATTCTCCTTCAAATTCTCCCAGTATCCATAGAAAACATGGCA
EST: gi|89169847|gb|CI110206.1|CI110206
EST:     AAAGGGAAGGCATCACCATTCTTTGCCTGTAAATAATACCCGTGTAAAAG                         GACCTGCCTATTCTCCTTCAAATTCTCCCAGTATCCATAGAAAACATGGCA
genomic: AAAGGGAAGGCATCACCATTCTTTGCCTGTAAATAATACCCGTGTAAAAGgtattccacc ... tatcgagcagGACCTGCCTATTCTCCTTCAAATTCTCCCAGTATCCATAGAAAACATGGCA
EST: gi|396941635|gb|HO188292.1|HO188292
EST:     AAAGGGAAGGCATCACCATTCTTTGCCTGTAAATAATACCCGTGTAAAAG                         GACCTGCCTATTCTCCTTCAAATTCTCCCAGTATCCATAGAAAACATGGCA
genomic: AAAGGGAAGGCATCACCATTCTTTGCCTGTAAATAATACCCGTGTAAAAGgtattccacc ... tatcgagcagGACCTGCCTATTCTCCTTCAAATTCTCCCAGTATCCATAGAAAACATGGCA
EST: gi|58667219|gb|CK055905.1|CK055905
EST:     AAAGGGAAGGCATCACCATTCTTTGCCTGTAAATAATACCCGTGTAAAAG                         GACCTGCCTATTCTCCTTCAAATTCTCCCAGTATCCATAGAAAACATGGCA
genomic: AAAGGGAAGGCATCACCATTCTTTGCCTGTAAATAATACCCGTGTAAAAGgtattccacc ... tatcgagcagGACCTGCCTATTCTCCTTCAAATTCTCCCAGTATCCATAGAAAACATGGCA
EST: gi|27545896|gb|CA764208.2|CA764208
EST:     GAAGGCATCACCATTCTTTGCCTGTAAATAATACCCGTGTAAAAG                         GACCTGCCTATTCTCCTTCAAATTCTCCCAGTATCCATAGAAAACATGGCA
genomic: GAAGGCATCACCATTCTTTGCCTGTAAATAATACCCGTGTAAAAGgtattccacc ... tatcgagcagGACCTGCCTATTCTCCTTCAAATTCTCCCAGTATCCATAGAAAACATGGCA
EST: gi|87009778|gb|CI310881.1|CI310881
EST:     AAAGGGAAGGCATCACCATTCTTTGCCTGTAAATAATACCCGTGTAAAAG                         GACCTGCCTATTCTCCTTCAAATTCTCCCAGTATCCATAGAAAACATGGCA
genomic: AAAGGGAAGGCATCACCATTCTTTGCCTGTAAATAATACCCGTGTAAAAGgtattccacc ... tatcgagcagGACCTGCCTATTCTCCTTCAAATTCTCCCAGTATCCATAGAAAACATGGCA
EST: gi|94362946|gb|CI053107.1|CI053107
EST:     AAAGGGAAGGCATCACCATTCTTTGCCTGTAAATAATACCCGTGTAAAAG                         GACCTGCCTATTCTCCTTCAAATTCTCCCAGTATCCATAGAAAACATGGCA
genomic: AAAGGGAAGGCATCACCATTCTTTGCCTGTAAATAATACCCGTGTAAAAGgtattccacc ... tatcgagcagGACCTGCCTATTCTCCTTCAAATTCTCCCAGTATCCATAGAAAACATGGCA
EST: gi|88961131|gb|CI096534.1|CI096534
EST:     AAAGGGAAGGCATCACCATTCTTTGCCTGTAAATAATACCCGTGTAAAAG                         GACCTGCCTATTCTCCTTCAAATTCTCCCAGTATCCATAGAAAACATGGCA
genomic: AAAGGGAAGGCATCACCATTCTTTGCCTGTAAATAATACCCGTGTAAAAGgtattccacc ... tatcgagcagGACCTGCCTATTCTCCTTCAAATTCTCCCAGTATCCATAGAAAACATGGCA
EST: gi|86423364|gb|CI060937.1|CI060937
EST:     AAAGGGAAGGCATCACCATTCTTTGCCTGTAAATAATACCCGTGTAAAAG                         GACCTGCCTATTCTCCTTCAAATTCTCCCAGTATCCATAGAAAACATGGCA
genomic: AAAGGGAAGGCATCACCATTCTTTGCCTGTAAATAATACCCGTGTAAAAGgtattccacc ... tatcgagcagGACCTGCCTATTCTCCTTCAAATTCTCCCAGTATCCATAGAAAACATGGCA