1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GTTGAGTTTAAGACTGCTTCAGGTCAATTGTTGGATCTTATTACTACTCATGAGGGAGAAAAGGATCTCACAAAGTACAACTTGACAGTgtaagttcattttgcatttacgtgtttgtttctttctttctttgcatgatttcctgtccatttgtttctaaaaataaggttcaaacaaaacaaaggaacg...
species | Oryza sativa |
transcript | LOC_Os01g50760.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: ATTACTACTCATGAGGGAGAAAAGGATCTCACAAAGTACAACTTGACAGT TCACCGCCGCATTGTTCAGTACAAGACAGCTTACTACTCATTCTATCTTCCEST: gi|88690724|gb|CI734803.1|CI734803
genomic: ATTACTACTCATGAGGGAGAAAAGGATCTCACAAAGTACAACTTGACAGTgtaagttcat ... tattgtgcagTCACCGCCGCATTGTTCAGTACAAGACAGCTTACTACTCATTCTATCTTCC
EST: ATTACTACTCATGAGGGAGAAAAGGATCTCACAAAGTACAACTTGACAGT TCACCGCCGCATTGTTCAGTACAAGACAGCTTACTACTCATTCTATCTTCCEST: gi|27577652|gb|CB000347.1|CB000347
genomic: ATTACTACTCATGAGGGAGAAAAGGATCTCACAAAGTACAACTTGACAGTgtaagttcat ... tattgtgcagTCACCGCCGCATTGTTCAGTACAAGACAGCTTACTACTCATTCTATCTTCC
EST: ATTACTACTCATGAGGGAGAAAAGGATCTCACAAAGTACAACTTGACAGT TCACCGCCGCATTGTTCAGTACAAGACAGCTTACTACTCATTCTATCTTCCEST: gi|27576092|gb|CA998786.1|CA998786
genomic: ATTACTACTCATGAGGGAGAAAAGGATCTCACAAAGTACAACTTGACAGTgtaagttcat ... tattgtgcagTCACCGCCGCATTGTTCAGTACAAGACAGCTTACTACTCATTCTATCTTCC
EST: ATTACTACTCATGAGGGAGAAAAGGATCTCACAAAGTACAACTTGACAGT TCACCGCCGCATTGTTCAGTACAAGACAGCTTACTACTCATTCTATCTTCCEST: gi|29620886|gb|CB625897.1|CB625897
genomic: ATTACTACTCATGAGGGAGAAAAGGATCTCACAAAGTACAACTTGACAGTgtaagttcat ... tattgtgcagTCACCGCCGCATTGTTCAGTACAAGACAGCTTACTACTCATTCTATCTTCC
EST: ATTACTACTCATGAGGGAGAAAAGGATCTCGCAAAGTACAACTTGACAGT TCACCGCCGCATTGTTCAGTACAAGACAGCTTACTACTCATTCTATCTTCCEST: gi|27576091|gb|CA998785.1|CA998785
genomic: ATTACTACTCATGAGGGAGAAAAGGATCTCACAAAGTACAACTTGACAGTgtaagttcat ... tattgtgcagTCACCGCCGCATTGTTCAGTACAAGACAGCTTACTACTCATTCTATCTTCC
EST: ATTACGACTCATGAGGGAGAAAAGGATCTCACAAAGTACAACTTGACAGT TCACCGCCGCATTGTTCAGTACAAGACAGCTTACTACTCATTCTATCTTCCEST: gi|29684521|gb|CB680796.1|CB680796
genomic: ATTACTACTCATGAGGGAGAAAAGGATCTCACAAAGTACAACTTGACAGTgtaagttcat ... tattgtgcagTCACCGCCGCATTGTTCAGTACAAGACAGCTTACTACTCATTCTATCTTCC
EST: ATTACTACTCATGAGGGAGAAAAGGATCTCACAAAGTACAACTTGACAGT TCACCGCCGCATTGTTCAGTACAAGACAGCTTACTACTCATTCTATCTTCCEST: gi|8856728|gb|AU094046.1|AU094046
genomic: ATTACTACTCATGAGGGAGAAAAGGATCTCACAAAGTACAACTTGACAGTgtaagttcat ... tattgtgcagTCACCGCCGCATTGTTCAGTACAAGACAGCTTACTACTCATTCTATCTTCC
EST: CACAAAGTNCAACTTGACAGT TCACCGCCGCATTGTTCAGTACAAGACAGCTTACTACTCATTCTATCTTCCEST: gi|29688203|gb|CB684478.1|CB684478
genomic: CACAAAGTACAACTTGACAGTgtaagttcat ... tattgtgcagTCACCGCCGCATTGTTCAGTACAAGACAGCTTACTACTCATTCTATCTTCC
EST: ATTACTACTCATGAGGGAGAAAAGGATCTCACAAAGTACAACTTGACAGT TCACCGCCGCATTGTTCAGTACAAGACAGCTTACTACTCATTCTATCTTCCEST: gi|27554346|gb|CA998246.1|CA998246
genomic: ATTACTACTCATGAGGGAGAAAAGGATCTCACAAAGTACAACTTGACAGTgtaagttcat ... tattgtgcagTCACCGCCGCATTGTTCAGTACAAGACAGCTTACTACTCATTCTATCTTCC
EST: ATTACTACTCATGAGGGAGAAAAGGATCTCACAAAGTACAACTTGACAGT TCACCGCCGCATTGTTCAGTACAAGACAGCTTACTACTCATTCTATCTTCCEST: gi|29684202|gb|CB680477.1|CB680477
genomic: ATTACTACTCATGAGGGAGAAAAGGATCTCACAAAGTACAACTTGACAGTgtaagttcat ... tattgtgcagTCACCGCCGCATTGTTCAGTACAAGACAGCTTACTACTCATTCTATCTTCC
EST: ATTACTACTCATGAGGGAGAAAAGGATCTCACAAAGTACAACTTGACAGT TCACCGCCGCATTGTTCAGTACAAGACAGCTTACTACTCATTCTATCTTCC
genomic: ATTACTACTCATGAGGGAGAAAAGGATCTCACAAAGTACAACTTGACAGTgtaagttcat ... tattgtgcagTCACCGCCGCATTGTTCAGTACAAGACAGCTTACTACTCATTCTATCTTCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTGAGTTTAAGACTGCTTCAGGTCAATTGTTGGATCTTATTACTACTCATGAGGGAGAAAAGGATCTCACAAAGTACAACTTGACAGTgtaagttcattttgcatttacgtgtttgtttctttctttctttgcatgatttcctgtccatttgtttctaaaaataaggttcaaacaaaacaaaggaacg
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacaaaa