1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GCTTATGATAATTTCACTACAGGAGTGCTTTGTCATGGTAAGGCGAGCGTTATCAAAGAAGGTCACAAGAGTTTTCCGAGTGGCCATACTTCTTgtaagtgaattctgtcagttgataatttcgtatgtatttctctaccttgttactacgaaatctcagtggaatttcagttagcattatcaaacacataggattggtcatactctagactgcaagagcttttacgtgctgcctgctcttgtggagtactgtggatcgctgacgaatttatttttgtttcttcag
species | Oryza sativa |
transcript | LOC_Os01g49820.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GAGCGTTATCAAAGGAGGTCACAAGAGTTTTCCGAGTGGCCATACTTCTT GGTCTTTTGCTGGCCTTGGTTTCCTGTCATGGTATCTGGCTGGTAAAATAAEST: gi|25807069|gb|CA763030.1|CA763030
genomic: GAGCGTTATCAAAGAAGGTCACAAGAGTTTTCCGAGTGGCCATACTTCTTgtaagtgaat ... gtttcttcagGGTCTTTTGCTGGCCTTGGTTTCCTGTCATGGTATCTGGCTGGTAAAATAA
EST: AAAGAAGGTCACAAGAGTTTTCCGAGTGGCCATACTTCTT GGTCTTTNGCTGGCCTGGGTTCCCGGTCATGGTATCTGGCTGGTAAAATAAEST: gi|5771042|gb|AU077931.1|AU077931
genomic: AAAGAAGGTCACAAGAGTTTTCCGAGTGGCCATACTTCTTgtaagtgaat ... gtttcttcagGGTCTTTTGCTGGCCTTGGTTTCCTGTCATGGTATCTGGCTGGTAAAATAA
EST: GAGCGTTATCAAAGAAGNTCACAAGAGTTTTCCGAGTGNCCATACTTCTT GGTCTTTTGCTGGCCTTGGTTTCCTGTCATGGTATCTGGCTGGTAAAATAA
genomic: GAGCGTTATCAAAGAAGGTCACAAGAGTTTTCCGAGTGGCCATACTTCTTgtaagtgaat ... gtttcttcagGGTCTTTTGCTGGCCTTGGTTTCCTGTCATGGTATCTGGCTGGTAAAATAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTTATGATAATTTCACTACAGGAGTGCTTTGTCATGGTAAGGCGAGCGTTATCAAAGAAGGTCACAAGAGTTTTCCGAGTGGCCATACTTCTTgtaagtgaattctgtcagttgataatttcgtatgtatttctctaccttgttactacgaaatctcagtggaatttcagttagcattatcaaacacataggattggtcatactctagactgcaagagcttttacgtgctgcctgctcttgtggagtactgtggatcgctgacgaatttatttttgtttcttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG