1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TCTATTGGGACAATCAATGGGAGGTGCAGTGGCTTTGAAAGTACACCTGAAACAACCAAAAGAATGGGATGGAGTGCTTCTTGTTGCACCTATGTGCAAGgtaaggttagaatctagaaaaaggttcaccaaatctagtgatctataacatttttattgttttgggtgttagttgtatattgtccaatgttcactttcaa...
species | Oryza sativa |
transcript | LOC_Os01g49380.2 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: ATGGGATGGAGTGCTTCTTGTTGCACCTATGTGCAAG ATGTTACACCACCAGCGCCAGTGTTGAAGGCATTGAGCATATTGTCATGCCEST: gi|27548274|gb|CA767490.2|CA767490
genomic: ATGGGATGGAGTGCTTCTTGTTGCACCTATGTGCAAGgtaaggttag ... atttcagaagATGTTACACCACCAGCGCCAGTGTTGAAGGCATTGAGCATATTGTCATGCC
EST: AACAACCAAAAGAATGGGATGGAGTGCTTCTTGTTGCACCTATGTGCAAG ACTTCAGAAGATGTTACACCACCAGCGCCAGTGTTGAAGGCATTGAGCATA
genomic: AACAACCAAAAGAATGGGATGGAGTGCTTCTTGTTGCACCTATGTGCAAGgtaaggttag ... atttcagaagA-T---G----T-T-ACACCACCAGCGCCAGTGTTGAAGGCATTGAGCATA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTATTGGGACAATCAATGGGAGGTGCAGTGGCTTTGAAAGTACACCTGAAACAACCAAAAGAATGGGATGGAGTGCTTCTTGTTGCACCTATGTGCAAGgtaaggttagaatctagaaaaaggttcaccaaatctagtgatctataacatttttattgttttgggtgttagttgtatattgtccaatgttcactttcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agaaaaa