Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCTGCAATGCCCATGGCATATACTGTGTTCCGTTGTATGACACGCTAGgtaagttgctggtttcattgagaaccaggaacacatgaaattgtatctggaactttttttttggaaagcaattatcagtatcacaacacataaacgtgcatttgaatggtagatgcttgtttaacaatgctccctgacatcttgcatcattttctgtggttgtag

Basic information

species Oryza sativa
transcript LOC_Os01g48910.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g48910.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G152127_T01 (Zea mays), 5'ss of exon 5
GCCTGCAATGCCCATGGCATATACTGTGTTCCGTTGTATGACACGCTAGgtaag--ttgctggtttcattgagaaccaggaacacatga-aattgta----tctggaactttttttttggaaagcaattatcagtatcacaacacataaacgtgcatttgaatggtagatgcttgtt-------taacaatgctccctgacatcttgcatcattttctgtggttgtag
|||||||||||||||||||| |||||||| ||  | ||||||||||| ||||||  ||  || ||  |  ||  |     ||  | | | |||| |     |||  ||     || |   |   |||  ||  |||      |||| |  | ||||| | || |||   |  ||| |       |||||||| |||    |||||    |||  || | ||| |||||
GCCTGCAATGCCCATGGCATCTACTGTGTGCCACTATATGACACGCTTGgtaagcttttttgtttgtaccgaacaatgaaaattcttcagaattatcatgttctcaaagcaaattgtcaaatcacaac-atgtgtacacagtcacacacgcatgcatgttaaaggtcc-tatttggtaagctgataacaatggtccactgcatctactgtcaacttttatggctgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29616395|gb|CB621407.1|CB621407
EST:     GGCATATACTGTG-CCCTGTTGTATGACACGCTAG                         GTGCTGGGGCTGTAGAATTTATACTGTGCCATGCTGAGGTAGAAATTGCTT
genomic: GGCATATACTGTGTTCC-GTTGTATGACACGCTAGgtaagttgct ... gtggttgtagGTGCTGGGGCTGTAGAATTTATACTGTGCCATGCTGAGGTAGAAATTGCTT
EST: gi|29617787|gb|CB622799.1|CB622799
EST:     GGCATATACTGTGTTCCCTTGTATGACACGCTAG                         GTGCTGGGGCTGTAGAATTTATACTGTGCCATGCTGAGGTAGAAATTGCTT
genomic: GGCATATACTGTGTTCCGTTGTATGACACGCTAGgtaagttgct ... gtggttgtagGTGCTGGGGCTGTAGAATTTATACTGTGCCATGCTGAGGTAGAAATTGCTT