1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CTTTCTAGAGGCCTGCCTGATTTAATGGATGTCGACTCACCCGGTCGTCTATCAAAATCAGCAAGATCAAAACAAATCACTCTTGTTCTGGATTTGGACGgtaagctggcagtaacttcacatcattcaatcttacctttgattgagtgttcttgttctgaatttgtgagttattctacatcagctggaaaacagttgat...
species | Oryza sativa |
transcript | LOC_Os01g43870.5 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: ATCAAAATCAGCAAGATCAAAACAAATCACTCTTGTTCTGGATTTGGACG AGACTCTTGTACATTCAACATTGGATCATTGTGACAATGTTGATTTCACCCEST: gi|300216153|gb|HO087938.1|HO087938
genomic: ATCAAAATCAGCAAGATCAAAACAAATCACTCTTGTTCTGGATTTGGACGgtaagctggc ... tcatatgcagAGACTCTTGTACATTCAACATTGGATCATTGTGACAATGTTGATTTCACCC
EST: ATCAAAATCAGCAAGATCAAAACAAATCACTCTTGTTCTGGATTTGGACG AGACTCTTGTACATTCAACATTGGATCATTGTGACAATGTTGATTTCACCCEST: gi|66915368|gb|CX102216.1|CX102216
genomic: ATCAAAATCAGCAAGATCAAAACAAATCACTCTTGTTCTGGATTTGGACGgtaagctggc ... tcatatgcagAGACTCTTGTACATTCAACATTGGATCATTGTGACAATGTTGATTTCACCC
EST: ATCAAAATCAGCAAGATCAAAACAAATCACTCTTGTTCTGGATTTGGACG AGACTCTTGTACATTCAACATTGGATCATTGTGACAATGTTGATTTCACCCEST: gi|300215929|gb|HO088555.1|HO088555
genomic: ATCAAAATCAGCAAGATCAAAACAAATCACTCTTGTTCTGGATTTGGACGgtaagctggc ... tcatatgcagAGACTCTTGTACATTCAACATTGGATCATTGTGACAATGTTGATTTCACCC
EST: ATCAAAATCAGCAAGATCAAAACAAATCACTCTTGTTCTGGATTTGGACG AGACTCTTGTACATTCAACATTGGATCATTGTGACAATGTTGATTTCACCC
genomic: ATCAAAATCAGCAAGATCAAAACAAATCACTCTTGTTCTGGATTTGGACGgtaagctggc ... tcatatgcagAGACTCTTGTACATTCAACATTGGATCATTGTGACAATGTTGATTTCACCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTTCTAGAGGCCTGCCTGATTTAATGGATGTCGACTCACCCGGTCGTCTATCAAAATCAGCAAGATCAAAACAAATCACTCTTGTTCTGGATTTGGACGgtaagctggcagtaacttcacatcattcaatcttacctttgattgagtgttcttgttctgaatttgtgagttattctacatcagctggaaaacagttgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA