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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGCATGCACCCGGAATGGCAAGACCGTGCAAGGGAGGAGGTTCTTGGTCTGTTTGGGAGGGACAAACCTGAGTACGAAGGCCTCAGCCGACTCAAGACGgtaagtactcggagaaacaataacactacactgaatatcgtatttcctttcatgttgtcagtgtcgacaattaattcagacatcgatttatcggtctctgcatttatgctttcag

Basic information

species Oryza sativa
transcript LOC_Os01g43774.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|87036860|gb|CI191482.1|CI191482
EST:     TGTTTGGGAGGGACAAACCTGAGTACGAAGGCCTCAGCCGACTCAAGACG                         GTCACCATGGTTTTATACGAGGTTCTTCGGTTGTACCCGCCGGCGATCGTC
genomic: TGTTTGGGAGGGACAAACCTGAGTACGAAGGCCTCAGCCGACTCAAGACGgtaagtactc ... atgctttcagGTCACCATGGTTTTATACGAGGTTCTTCGGTTGTACCCGCCGGCGATCGTC
EST: gi|87036263|gb|CI190885.1|CI190885
EST:     TGTTTGGGAGGGACAAACCTGAGTACGAAGGCCTCAGCCGACTCAAGACG                         GTCACCATGGTTTTATACGAGGTTCTTCGGTTGTACCCGCCGGCGATCGTC
genomic: TGTTTGGGAGGGACAAACCTGAGTACGAAGGCCTCAGCCGACTCAAGACGgtaagtactc ... atgctttcagGTCACCATGGTTTTATACGAGGTTCTTCGGTTGTACCCGCCGGCGATCGTC
EST: gi|86505973|gb|CI148606.1|CI148606
EST:     CTCAGCCGACTCAAGACG                         GTCACCATGGTTTTATACGAGGTTCTTCGGTTGTACCCGCCGGCGATCGTC
genomic: CTCAGCCGACTCAAGACGgtaagtactc ... atgctttcagGTCACCATGGTTTTATACGAGGTTCTTCGGTTGTACCCGCCGGCGATCGTC
EST: gi|55828197|gb|AU067869.2|AU067869
EST:     AAACCTGAGTACGAAGGCNTCAGCCGACTCAAGACG                         GTCACCATGGTTTTATACGAGGTTCTTCGGTTGTACCCGCCGGCGATCGTC
genomic: AAACCTGAGTACGAAGGCCTCAGCCGACTCAAGACGgtaagtactc ... atgctttcagGTCACCATGGTTTTATACGAGGTTCTTCGGTTGTACCCGCCGGCGATCGTC
EST: gi|87039527|gb|CI194149.1|CI194149
EST:     TGTTTGGGAGGGACAAACCTGAGTACGAAGGCCTCAGCCGACTCAAGACG                         GTCACCATGGTTTTATACGAGGTTCTTCGGTTGTACCCGCCGGCGATCGTC
genomic: TGTTTGGGAGGGACAAACCTGAGTACGAAGGCCTCAGCCGACTCAAGACGgtaagtactc ... atgctttcagGTCACCATGGTTTTATACGAGGTTCTTCGGTTGTACCCGCCGGCGATCGTC
EST: gi|55828198|gb|AU067871.2|AU067871
EST:     AAACCTGAGTACGAAGGCTTCAGCCGACTCAAGACG                         GTCACCATGGTTTTATACGAGGTTCTTCGGTTGTACCCGCCGGCGATCGTC
genomic: AAACCTGAGTACGAAGGCCTCAGCCGACTCAAGACGgtaagtactc ... atgctttcagGTCACCATGGTTTTATACGAGGTTCTTCGGTTGTACCCGCCGGCGATCGTC