Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTGAAGCCTTTTCTAATATTCCTGCTGATTTAGTGGTGGATTTGCAAAGGATGCTATCAGTTGATGTAGCATCACGCCCTAGTGCTATGGCGTTCACAGgtaaattatcacttatcatttctttatcttgggcataagatcttccagaatggagtttttggatgttctatttgattggagatcaccaggttacctatacttacatgaaattcttttgaaatgttgcaccttctgtctgatag

Basic information

species Oryza sativa
transcript LOC_Os01g42950.3
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g42950.2 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G061681_T02 (Zea mays), 5'ss of exon 5
AGTGAAGCCTTTTCTAATATTCCTGCTGATTTAGTGGTGGATTTGCAAAGGATGCTATCAGTTGATGTAGCATCACGCCCTAGTGCTATGGCGTTCACAGgtaaattatcacttatcatttctttatcttgggcataagatcttccagaatggagtttttggatgttctatttgattggagatcaccag-gttacctatacttacatgaaatt-cttttgaaatgttgcaccttctgtctgatag
|||||||||||||||||||||||| ||||||| ||   |||||||||||||||| ||||  | |||| || ||| || ||||||||| |||| || ||||||   | | ||| |  | || | | || |  || | ||       || |   || |||||       ||   ||   | | ||||  |     ||  ||  || ||||||||   |||| ||||| |  |  || |||       
AGTGAAGCCTTTTCTAATATTCCTTCTGATTTGGTATCGGATTTGCAAAGGATGATATCGATGGATGCAGTATCGCGTCCTAGTGCTGTGGCCTTTACAGgtgtgt-aacaccttcctttccctcatttaagggaaaa------tcaaaggagatttttt-----cactcactgggggtaaatcatgaccaccactgattatttcatgaaatgatttttaaaatgcta-aatttttgtgcag---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58665583|gb|CK054269.1|CK054269
EST:     GATGCTATCAGTTGATGTAGCATCACGCCCTAGTGCTATGGCGTTCACAG                         GCTCTTCCTTCTTCCGGAATGATACGCGGTTGCGTGCTCTTCGTTTCCTTG
genomic: GATGCTATCAGTTGATGTAGCATCACGCCCTAGTGCTATGGCGTTCACAGgtaaattatc ... tgtctgatagGCTCTTCCTTCTTCCGGAATGATACGCGGTTGCGTGCTCTTCGTTTCCTTG
EST: gi|58653744|gb|CK042424.1|CK042424
EST:     GATGCTATCAGTTGATGTAGCATCACGCCCTAGTGCTATGGCGTTCACAG                         GCTCTTCCTTCTTCCGGAATGATACGCGGTTGCGTGCTCTTCGTTTCCTTG
genomic: GATGCTATCAGTTGATGTAGCATCACGCCCTAGTGCTATGGCGTTCACAGgtaaattatc ... tgtctgatagGCTCTTCCTTCTTCCGGAATGATACGCGGTTGCGTGCTCTTCGTTTCCTTG