1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TATACTTGGAGTTGCATATGGCTTCTTCGCTGCAACCGTAGCCGTCCAGAGGATCTTGCAGAGACACTATCACATACTTACCAAAAGGGAGCTCACAAAGgtaaacactgcttgaagtcatcacttgtcatttcctctgaaccagtgaaatagtagtatttgttaatcagctcgtttaatactctgtacttccactgtttgatgatgtgcag
species | Oryza sativa |
transcript | LOC_Os01g42500.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TACTTACCAAAAGGGAGCTCACAAAG GAATATGTGGTGGAGGACCTTCGCGGGTGTTATACACCACCAAAGATGGATEST: gi|86498383|gb|CI141016.1|CI141016
genomic: TACTTACCAAAAGGGAGCTCACAAAGgtaaacactg ... tgatgtgcagGAATATGTGGTGGAGGACCTTCGCGGGTGTTATACACCACCAAAGATGGAT
EST: GGATCTTGCAGAGACACTATCACATACTTACCAAAAGGGAGCTCACAAAG GAATATGTGGTGGAGGACCTTCGCGGGTGTTATACACCACCAAAGATGGATEST: gi|86489755|gb|CI132388.1|CI132388
genomic: GGATCTTGCAGAGACACTATCACATACTTACCAAAAGGGAGCTCACAAAGgtaaacactg ... tgatgtgcagGAATATGTGGTGGAGGACCTTCGCGGGTGTTATACACCACCAAAGATGGAT
EST: TCACATACTTACCAAAAGGGAGCTCACAAAG GAATATGTGGTGGAGGACCTTCGCGGGTGTTATACACCACCAAAGATGGATEST: gi|86499625|gb|CI142258.1|CI142258
genomic: TCACATACTTACCAAAAGGGAGCTCACAAAGgtaaacactg ... tgatgtgcagGAATATGTGGTGGAGGACCTTCGCGGGTGTTATACACCACCAAAGATGGAT
EST: AGGGAGCTCACAAAG GAATATGTGGTGGAGGACCTTCGCGGGTGTTATACACCACCAAAGATGGATEST: gi|29661890|gb|CB658165.1|CB658165
genomic: AGGGAGCTCACAAAGgtaaacactg ... tgatgtgcagGAATATGTGGTGGAGGACCTTCGCGGGTGTTATACACCACCAAAGATGGAT
EST: GGATCTTGCAGAGACACTATCACATACTTACCAAAAGGGAGCTCACAAAG GAATATGTGGTGGAGGACCTTCGCGGGTGTTATACACCACCAAAGATGGATEST: gi|88227286|gb|CI228399.1|CI228399
genomic: GGATCTTGCAGAGACACTATCACATACTTACCAAAAGGGAGCTCACAAAGgtaaacactg ... tgatgtgcagGAATATGTGGTGGAGGACCTTCGCGGGTGTTATACACCACCAAAGATGGAT
EST: TATCACATACTTACCAAAAGGGAGCTCACAAAG GAATATGTGGTGGAGGACCTTCGCGGGTGTTATACACCACCAAAGATGGATEST: gi|86493055|gb|CI135688.1|CI135688
genomic: TATCACATACTTACCAAAAGGGAGCTCACAAAGgtaaacactg ... tgatgtgcagGAATATGTGGTGGAGGACCTTCGCGGGTGTTATACACCACCAAAGATGGAT
EST: ACACTATCACATACTTACCAAAAGGGAGCTCACAAAG GAATATGTGGTGGAGGACCTTCGCGGGTGTTATACACCACCAAAGATGGATEST: gi|89168412|gb|CI109616.1|CI109616
genomic: ACACTATCACATACTTACCAAAAGGGAGCTCACAAAGgtaaacactg ... tgatgtgcagGAATATGTGGTGGAGGACCTTCGCGGGTGTTATACACCACCAAAGATGGAT
EST: CAGAGACACTATCACATACTTACCNAAAGGGAGCTCACAAAG GAATATGTGGTGGAGGACCTTCGCGGGTGTTATACACCACCAAAGATGGAT
genomic: CAGAGACACTATCACATACTTACCAAAAGGGAGCTCACAAAGgtaaacactg ... tgatgtgcagGAATATGTGGTGGAGGACCTTCGCGGGTGTTATACACCACCAAAGATGGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TATACTTGGAGTTGCATATGGCTTCTTCGCTGCAACCGTAGCCGTCCAGAGGATCTTGCAGAGACACTATCACATACTTACCAAAAGGGAGCTCACAAAGgtaaacactgcttgaagtcatcacttgtcatttcctctgaaccagtgaaatagtagtatttgttaatcagctcgtttaatactctgtacttccactgtttgatgatgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA