1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
ATGTCCCTATCAGTGCTAGGGATATTTTGGGAGACCTCAAGCTCAAAGAGAGTGTCAAAGCCCACACgtaagtggctcctggtcattccttcataatcttgtgttatgtagatagagtacttgtttttcaacaggggaacaaactagactggtaggttaaattattc...
species | Oryza sativa |
transcript | LOC_Os01g34620.9 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AGGGATATTTTGGGAGACCTCAAGCTCAAAGAGAGTGTCAAAGCCCACAC CAACTGGCCTACATTTCCACAAATATTTATCAAAGGAGAGTTTGTTGGGGGEST: gi|86501844|gb|CI144477.1|CI144477
genomic: AGGGATATTTTGGGAGACCTCAAGCTCAAAGAGAGTGTCAAAGCCCACACgtaagtggct ... gcttgtgcagCAACTGGCCTACATTTCCACAAATATTTATCAAAGGAGAGTTTGTTGGGGG
EST: AGGGATATTTTGGGAGACCTCAAGCTCAAAGAGAGTGTCAAAGCCCACAC CAACTGGCCTACATTTCCACAAATATTTATCAAAGGAGAGTTTGTTGGGGGEST: gi|86510934|gb|CI153567.1|CI153567
genomic: AGGGATATTTTGGGAGACCTCAAGCTCAAAGAGAGTGTCAAAGCCCACACgtaagtggct ... gcttgtgcagCAACTGGCCTACATTTCCACAAATATTTATCAAAGGAGAGTTTGTTGGGGG
EST: AGGGATATTTTGGGAGACCTCAAGCTCAAAGAGAGTGTCAAAGCCCACAC CAACTGGCCTACATTTCCACAAATATTTATCAAAGGAGAGTTTGTTGGGGGEST: gi|58675402|gb|CK064089.1|CK064089
genomic: AGGGATATTTTGGGAGACCTCAAGCTCAAAGAGAGTGTCAAAGCCCACACgtaagtggct ... gcttgtgcagCAACTGGCCTACATTTCCACAAATATTTATCAAAGGAGAGTTTGTTGGGGG
EST: AGGGATATTTTGGGAGACCTCAAGCTCAAAGAGAGTGTCAAAGCCCACAC CAACTGGCCTACATTTCCACAAATATTTATCAAAGGAGAGTTTGTTGGGGGEST: gi|33662135|gb|CF293102.1|CF293102
genomic: AGGGATATTTTGGGAGACCTCAAGCTCAAAGAGAGTGTCAAAGCCCACACgtaagtggct ... gcttgtgcagCAACTGGCCTACATTTCCACAAATATTTATCAAAGGAGAGTTTGTTGGGGG
EST: AGGGATATTTTGGGAGACCTCAAGCTCAAAGAGAGTGTCAAAGCCCACAC CAACTGGCCTACATTTCCACAAATATTTATCAAAGGAGAGTTTGTTGGGGGEST: gi|86825099|gb|CI358251.1|CI358251
genomic: AGGGATATTTTGGGAGACCTCAAGCTCAAAGAGAGTGTCAAAGCCCACACgtaagtggct ... gcttgtgcagCAACTGGCCTACATTTCCACAAATATTTATCAAAGGAGAGTTTGTTGGGGG
EST: TCAAAGAGAGTGTCAAAGCCCACAC CAACTGGCCTACATTTCCACAAATATTTATCAAAGGAGAGTTTGTTGGGGGEST: gi|33662134|gb|CF293101.1|CF293101
genomic: TCAAAGAGAGTGTCAAAGCCCACACgtaagtggct ... gcttgtgcagCAACTGGCCTACATTTCCACAAATATTTATCAAAGGAGAGTTTGTTGGGGG
EST: AGGGATATTTTGGGAGACCTCAAGCTCAAAGAGAGTGTCAAAGCCCACAC CAACTGGCCTACATTTCCACAAATATTTATCAAAGGAGAGTTTGTTGGGGGEST: gi|33808808|gb|CF330289.1|CF330289
genomic: AGGGATATTTTGGGAGACCTCAAGCTCAAAGAGAGTGTCAAAGCCCACACgtaagtggct ... gcttgtgcagCAACTGGCCTACATTTCCACAAATATTTATCAAAGGAGAGTTTGTTGGGGG
EST: AGGGATATTTTGGGAGACCTCAAGCTCAAAGAGAGTGTCAAAGCCCACAC CAACTGGCCTACATTTCCACAAATATTTATCAAAGGAGAGTTTGTTGGGGGEST: gi|33680954|gb|CF309193.1|CF309193
genomic: AGGGATATTTTGGGAGACCTCAAGCTCAAAGAGAGTGTCAAAGCCCACACgtaagtggct ... gcttgtgcagCAACTGGCCTACATTTCCACAAATATTTATCAAAGGAGAGTTTGTTGGGGG
EST: AGGGATATTTTGGGAGACCTCAAGCTCAAAGAGAGTGTCAAAGCCCACAC CAACTGGCCTACATTTCCACAAATATTTATCAAAGGAGAGTTTGTTGGGGGEST: gi|218489064|gb|FG948407.1|FG948407
genomic: AGGGATATTTTGGGAGACCTCAAGCTCAAAGAGAGTGTCAAAGCCCACACgtaagtggct ... gcttgtgcagCAACTGGCCTACATTTCCACAAATATTTATCAAAGGAGAGTTTGTTGGGGG
EST: AGGGATATTTTGGGAGACCTCAAGCTCAAAGAGAGTGTCAAAGCCCACAC CAACTGGCCTACATTTCCACAAATATTTATCAAAGGAGAGTTTGTTGGGGGEST: gi|218505071|gb|FG947171.1|FG947171
genomic: AGGGATATTTTGGGAGACCTCAAGCTCAAAGAGAGTGTCAAAGCCCACACgtaagtggct ... gcttgtgcagCAACTGGCCTACATTTCCACAAATATTTATCAAAGGAGAGTTTGTTGGGGG
EST: AGGGATATTTTGGGAGACCTCAAGCTCAAAGAGAGTGTCAAAGCCCACAC CAACTGGCCTACATTTCCACAAATATTTATCAAAGGAGAGTTTGTTGGGGGEST: gi|218500313|gb|FG954965.1|FG954965
genomic: AGGGATATTTTGGGAGACCTCAAGCTCAAAGAGAGTGTCAAAGCCCACACgtaagtggct ... gcttgtgcagCAACTGGCCTACATTTCCACAAATATTTATCAAAGGAGAGTTTGTTGGGGG
EST: AGGGATATTTTGGGAGACCTCAAGCTCAAAGAGAGTGTCAAAGCCCACAC CAACTGGCCTACATTTCCACAAATATTTATCAAAGGAGAGTAAGTAGGGGGEST: gi|58693371|gb|CK082058.1|CK082058
genomic: AGGGATATTTTGGGAGACCTCAAGCTCAAAGAGAGTGTCAAAGCCCACACgtaagtggct ... gcttgtgcagCAACTGGCCTACATTTCCACAAATATTTATCAAAGGAGAGTTTGTTGGGGG
EST: AGGGATATTTTGGGAGACCTCAAGCTCAAAGAGAGTGTCAAAGCCCACAC CAACTGGCCTACATTTCCACAAATATTTATCEST: gi|38477159|gb|CF961292.1|CF961292
genomic: AGGGATATTTTGGGAGACCTCAAGCTCAAAGAGAGTGTCAAAGCCCACACgtaagtggct ... gcttgtgcagCAACTGGCCTACATTTCCACAAATATTTATC
EST: AGGGATATTTTGGGAGACCTCAAGCTCAAAGAGAGTGTCAAAGCCCACAC CAACTGGCCTACATTTCCACAAATATTTATCAAAGGAGAGTTTGTTGGGGGEST: gi|86431345|gb|CI084956.1|CI084956
genomic: AGGGATATTTTGGGAGACCTCAAGCTCAAAGAGAGTGTCAAAGCCCACACgtaagtggct ... gcttgtgcagCAACTGGCCTACATTTCCACAAATATTTATCAAAGGAGAGTTTGTTGGGGG
EST: AGGGATATTTTGGGAGACCTCAAGCTCAAAGAGAGTGTCAAAGCCCACAC CAACTGGCCTACATTTCCACAAATATTTATCAAAGGAGAGTTTGTTGGGGGEST: gi|218483000|gb|FG956128.1|FG956128
genomic: AGGGATATTTTGGGAGACCTCAAGCTCAAAGAGAGTGTCAAAGCCCACACgtaagtggct ... gcttgtgcagCAACTGGCCTACATTTCCACAAATATTTATCAAAGGAGAGTTTGTTGGGGG
EST: AGGGATATTTTGGGAGACCTCAAGCTCAAAGAGAGTGTCAAAGCCCACAC CAACTGGCCTACATTTCCACAAATATTTATCCAAGGAGAGTTTGTTGGGGG
genomic: AGGGATATTTTGGGAGACCTCAAGCTCAAAGAGAGTGTCAAAGCCCACACgtaagtggct ... gcttgtgcagCAACTGGCCTACATTTCCACAAATATTTATCAAAGGAGAGTTTGTTGGGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGTCCCTATCAGTGCTAGGGATATTTTGGGAGACCTCAAGCTCAAAGAGAGTGTCAAAGCCCACACgtaagtggctcctggtcattccttcataatcttgtgttatgtagatagagtacttgtttttcaacaggggaacaaactagactggtaggttaaattattc
- - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - AAGAGA