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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTGCCAATTGGCAGAAGCCCTCGTACTGACGTCCTTCTAAAAGCAGAGAATGTTGTTCTTGAGGCAGGAGGCTGTGTCCTCAGGCTAGCAGGACTCTATatatcctcaattgatgactatttgttgttctaaagtgcaagcaatattaacgcaagttcttttacattggtatgaagagaactgatacaacgtttccttgacttggacacac

Basic information

species Oryza sativa
transcript LOC_Os01g26920.1
intron # 5
splice site 5'
intron type U12 (go to U12 genes for details)

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g26920.2 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G017853_T01 (Zea mays), 5'ss of exon 5
TGTGCCAATTGGCAGAAGCCCTCGTACTGACGTCCTTCTAAAAGCAGAGAATGTTGTTCTTGAGGCAGGAGGCTGTGTCCTCAGGCTAGCAGGACTCTATatatcctcaattgatgactatttgttgttctaaagtgcaagcaatattaacgcaagttcttttacattggtatgaagagaactgatacaacgtttccttgacttggacacac
 |||||||||||||| ||||||||||||||  | ||||||||||  || ||||||||||||||||||||||||||||| |||||||| || ||||| ||||||||| ||| | |||  || |||||  |  ||||     |    |   ||| ||| |  |   ||   |   |||     |    ||| ||   ||   ||  |       
AGTGCCAATTGGCAGGAGCCCTCGTACTGATATTCTTCTAAAAGTGGAAAATGTTGTTCTTGAGGCAGGAGGCTGTGTTCTCAGGCTGGCTGGACTTTATatatccccaactaatgcttaattgtttgtagaaaggtattgtgggac--acg-aaggtggtgcgcacctgcgggaacgcgcccagcacatcggggcc---acccgc------