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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTACTTTCTTACTGTATTATTCAGGATTAAGGTCCCATCATAAAAGTTCTTCCTTGAAACCGCATGTCAGTGGGAATTTCATACAAGATTGgtacttctaagaaactctatattttattgtaaaaacatcataatgagtgaaaattaacgtctagcatctcttttgcactcgagatatttcattagttctt...

Basic information

species Oryza sativa
transcript LOC_Os01g25189.4
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g25189.4 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G473533_T06 (Zea mays), 5'ss of exon 5
GTTACTTTCTTACTGTATTATTCAGGATTAAGGTCCCATCATAAAAGTTCTTCCTTGAAACCGCATGTCAGTGGGAATTTCATACAAGATTGgtacttctaagaaactctatattttatt-gtaaa-aacatcataatgag-tgaaaattaacgtctagcatctcttttgcac----tcgagatatt-tcattagttctt-------------------------------------------------------------------------------------------
||| ||||   ||| ||   | | ||  | | ||||   || ||||||||||| |||| ||| ||||| |||||||  ||||| |||||||||||||||||  |||||||||||| | || ||| | || |  || |   | | |   || ||   ||   | |||| |  ||    ||  | |||| |    || ||                                                                                             
GTTTCTTTTGCACTCTACATTGCCGGCATCAAGTCCGGCCACAAAAGTTCTTCTTTGAGACCACATGTTAGTGGGAGCTTCATGCAAGATTGgtacttctagaaaactctatattgtgtttgtatataaaactatgactcgcttatttttgacacataagttttcttgtctacaaattcttgttattattgaaagatcaagcaaacagaatatttcactggccgtgtattttattgcaattctcttttagttaacaacgacactttttgtgctgatgactttgtttaatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88381595|gb|CI682259.1|CI682259
EST:     AAAAGTTCTTCCTTGAAACCGCATGTCAGTGGGAATTTCATACAAGATTG                         GTGGTTGGGAGTGC
genomic: AAAAGTTCTTCCTTGAAACCGCATGTCAGTGGGAATTTCATACAAGATTGgtacttctaa ... tgtctactagGTGGTTGGGAGTGC
EST: gi|88578322|gb|CI687245.1|CI687245
EST:     AAAAGTTCTTCCTTGAAACCGCATGTCAGTGGGAATTTCATACAAGATTG                         GTGGTTGGGAGTGCAGCTGAATCCTCATTTCATGGGAGTTGACCTCAA
genomic: AAAAGTTCTTCCTTGAAACCGCATGTCAGTGGGAATTTCATACAAGATTGgtacttctaa ... tgtctactagGTGGTTGGGAGTGCAGCTGAATCCTCATTTCATGGGAGTTGACCTCAA
EST: gi|58679610|gb|CK068297.1|CK068297
EST:     AGTGGGAATTTCATACAAGA-TG                         GTGGTTGGGAGTGCAGCTGAATCCTCATTTCATGGGAGTTGACCTCAA
genomic: AGTGGGAATTTCATACAAGATTGgtacttctaa ... tgtctactagGTGGTTGGGAGTGCAGCTGAATCCTCATTTCATGGGAGTTGACCTCAA
EST: gi|88392073|gb|CI683901.1|CI683901
EST:     AAAAGTTCTTCCTTGAAACCGCATGTCAGTGGGAATTTCATACAAGATTG                         GTGGTTGGGAG
genomic: AAAAGTTCTTCCTTGAAACCGCATGTCAGTGGGAATTTCATACAAGATTGgtacttctaa ... tgtctactagGTGGTTGGGAG