1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TTCTTCTAGTGGAAACAGCAAACTGGACATTGCATTCAAGGATGCTAACAGGATAGCTAAGAGGAATTCTACCAAGTGCCCTGTTTTTCTGTTCTTCTCCgtaagtacctctaatgtattcaaactacatttattcagtgttgtctgtgattaaaatattaattctgggatttcttgtttatcag
species | Oryza sativa |
transcript | LOC_Os01g22630.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GGATAGCTAAGAGGAATTCTACCAAGTGCCCTGTTTTTCTGTTCTTCTCC GTGAATGGTAGTGGGCTCTTCTGTGGCATGGCTGAEST: gi|218505169|gb|FG956729.1|FG956729
genomic: GGATAGCTAAGAGGAATTCTACCAAGTGCCCTGTTTTTCTGTTCTTCTCCgtaagtacct ... tgtttatcagGTGAATGGTAGTGGGCTCTTCTGTGGCATGGCTGA
EST: GAATTCTACCAAGTGCCCTGTTTTTCTGTTCTTCTCC GTGAATGGTAGTGGGCTCTTCTGTGGCATGGCTGAGATGGTTGGTCCTGTT
genomic: GAATTCTACCAAGTGCCCTGTTTTTCTGTTCTTCTCCgtaagtacct ... tgtttatcagGTGAATGGTAGTGGGCTCTTCTGTGGCATGGCTGAGATGGTTGGTCCTGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCTTCTAGTGGAAACAGCAAACTGGACATTGCATTCAAGGATGCTAACAGGATAGCTAAGAGGAATTCTACCAAGTGCCCTGTTTTTCTGTTCTTCTCCgtaagtacctctaatgtattcaaactacatttattcagtgttgtctgtgattaaaatattaattctgggatttcttgtttatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA