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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTGAAGAAGAGTGACCCTCATGGACTTCTGTATGGTCTTATTTCTTTCCAGTCTTCACCACATAGAAACAAGGATAGCAAATGGTTCATCAGTCCAAAGgtactgtctattgcagttatcctgtaccaagatttatttatttaggcagctcttctgacatatcacatatgagaaatgcag

Basic information

species Oryza sativa
transcript LOC_Os01g22550.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g22550.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G160958_T01 (Zea mays), 5'ss of exon 5
CCTGAAGAAGAGTGACCCTCATGGACTTCTGTATGGTCTTATTTCTTTCCAGTCTTCACCACATAGAAACAAGGATAGCAAATGGTTCATCAGTCCAAAGgtactgtctattgcagttatcctgtaccaagattt-atttatttaggcagctcttctgacatatcacatatgagaaatgcag
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CCTAAAGAAGAGCAATTCCAATGGCCTTCTTTATGGTCTCATTTCTTTCCAATCTTCCCCCCACAGAGACAAGGGTAGCAAATGGTTCATCAGTCGGAAGgtattgcatactccatttatcccgcatggggattttgtttgtttcaattgcttttct-------cacccatgagaaatacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|89180327|gb|CI044606.1|CI044606
EST:     CTTCACCACATAGAAACAAGGATAGCAAATGGTTCATCAGTCCAAAG                         GAATGGCCTGTTGAAGCATATCCACCATGGGCTCATGGCCGTGGATATATA
genomic: CTTCACCACATAGAAACAAGGATAGCAAATGGTTCATCAGTCCAAAGgtactgtcta ... agaaatgcagGAATGGCCTGTTGAAGCATATCCACCATGGGCTCATGGCCCTGGATATATA
EST: gi|58676893|gb|CK065580.1|CK065580
EST:     AGTCTTCACCACATAGAAACAAGGATAGCAAATGGTTCATCAGTCCAAAG                         GAATGGCCTGTTGAAGCATATCCACCATGGGCTCATGGCCCTGGATATATA
genomic: AGTCTTCACCACATAGAAACAAGGATAGCAAATGGTTCATCAGTCCAAAGgtactgtcta ... agaaatgcagGAATGGCCTGTTGAAGCATATCCACCATGGGCTCATGGCCCTGGATATATA