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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGGGGGATCTTCTTATTGATGACTACTCAACTGGGTTCTGTTCTGGTGGTTGCGCCGCTATTGCGGATTCAGGGACTTCATTGCTCGGTGGCCCAACAgtatgtaaccttcaatctctaactaatgttatggtcctttagtgtggtactagaagttaacacaaattaacacacaaaaaaagtggtactttgcagtttc...

Basic information

species Oryza sativa
transcript LOC_Os01g18630.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g18630.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G077233_T01 (Zea mays), 5'ss of exon 12
GATGGGGGATCTTCTTATTGATGACTACTCAACTGGGTTCTGTTCTGGTGGTTGCGCCGCTATTGCGGATTCAGGGACTTCATTGCTCGGTGGCCCAACAgtatgtaaccttcaatctctaactaatgttatggtcctttagtgtggtactagaagt-taacacaaattaacacacaaaaaaagtggtactttgcagtttc
 ||||| |||||| |||||| || | |||||||||| |||||| ||||||| || || ||||||| ||| ||||||||||||||||| | ||| ||||| |||||||  ||| |||  || | |  ||  ||   | ||||||    |   ||||   |  ||| | |||     | || |  ||  | ||          
CATGGGAGATCTTATTATTGGTGGCCACTCAACTGGTTTCTGTGCTGGTGGCTGTGCTGCTATTGTGGACTCAGGGACTTCATTGCTTGCTGGTCCAACTgtatgtattcttgaattcctgaatggtga-atacacatttagtaccttttcagaaaaatggcacgacttatttt-ctaatattgttctgctccag------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86596608|gb|CI286521.1|CI286521
EST:     GTTGCGCCGCTATTGCGGATTCAGGGACTTCATTGCTCGGTGGCCCAACA                         ACTATTGTTGCTCAAATTAATCACGCAATTGGAGCTGAGGGAATTGTTAGT
genomic: GTTGCGCCGCTATTGCGGATTCAGGGACTTCATTGCTCGGTGGCCCAACAgtatgtaacc ... ctgctgtcagACTATTGTTGCTCAAATTAATCACGCAATTGGAGCTGAGGGAATTGTTAGT
EST: gi|86904214|gb|CI306632.1|CI306632
EST:     GTTGCGCCGCTATTGCGGATTCAGGGACTTCATTGCTCGGTGGCCCAACA                         ACTATTGTTGCTCAAATTAATCACGCAATTGGAGCTGAGGGAATTGTTAGT
genomic: GTTGCGCCGCTATTGCGGATTCAGGGACTTCATTGCTCGGTGGCCCAACAgtatgtaacc ... ctgctgtcagACTATTGTTGCTCAAATTAATCACGCAATTGGAGCTGAGGGAATTGTTAGT
EST: gi|29670409|gb|CB666684.1|CB666684
EST:     GTTGCGCCGCTATTGCGGATTCAAGGACTTCATTGCTCGGTGGCCCAACA                         ACTATTGTTGCTCAAATTAATCACGCAATTGGAGCTGAGGGAATTGTTAGT
genomic: GTTGCGCCGCTATTGCGGATTCAGGGACTTCATTGCTCGGTGGCCCAACAgtatgtaacc ... ctgctgtcagACTATTGTTGCTCAAATTAATCACGCAATTGGAGCTGAGGGAATTGTTAGT
EST: gi|25797199|gb|CA753160.1|CA753160
EST:     GTTGCGCCGCTATTGCGGATTCAGGGACTTCATTGCTCGGTGGCCCAACA                         ACTATTGTTGCTCAAATTAATCACGCAATTGGAGCTG
genomic: GTTGCGCCGCTATTGCGGATTCAGGGACTTCATTGCTCGGTGGCCCAACAgtatgtaacc ... ctgctgtcagACTATTGTTGCTCAAATTAATCACGCAATTGGAGCTG